Prupe.5G120300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016626
Physical Location & Seq
Reverse (-)
12020806 .. 12022423
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G120300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 456 bp
ATGTTGAGCTCTTTCCTTTCTTTTTTCAGTAGGATCAAAACAGTAGATGCCATGCTAGAACTTGAGAAACCCGACGTAAAAAATTTTATATACAGAGATGAGTTAAGTAAGAAGCCATTTTCAAAGAAGCAAAAGATGAATGGCAGTACTTGCTTTGAAAGTTCAGAGTCACTGATCAAGAGGGAATTGGAAGATGGGAAACTTTGTGGGGGGAGATCAAGCTATGGCAGTGCAGCTGAGGAGAAAGGAGAAGTGATCAGAGTAAAGATTAAGATGACGAAGCAAGAAGCGGCACAAATGCTTTCCAAGTGCAAAGATGGAGGAGTTCTCGAATTCAAGGATGTAACTTGTGCGCTTGCGCAGATTCCAACGAGTCGTGTTCGTATTGACCCGTCACCAGCCACTTGCTGTGGTGCTGTTCCAGCAGTTCTGAAGACCATCCCTGAAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.73

Weight (kDa)

8.7

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23880
fragaria_vesca FvH4_5g04620
prunus_persica Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1
rosa_laevigata RLG00000004171
rosa_multiflora Rmu_sc0004154.1_g000015
rosa_roxburghii Rroxscaffold_3G00261020
rosa_rugosa Rorug07G0018100
rosa_samantha Rh7AG145800 Rh7BG145700 Rh7CG149700 Rh7DG147100
rosa_wichuraiana Rw7G012450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 2 cut(s) 82, 332
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 3 cut(s) 123, 158, 337
AluBI AGCT 3 cut(s) 9, 222, 236
AluI AGCT 3 cut(s) 9, 222, 236
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 82, 332
AspLEI GCGC 2 cut(s) 355, 361
AsuHPI GGTGA 1 cut(s) 387
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 188, 311, 446
BclI TGATCA 2 cut(s) 174, 255
BfaI CTAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 234, 291
BlsI GCNGC 2 cut(s) 235, 292
BmcAI AGTACT 1 cut(s) 148
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 312, 344
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 83
BseGI GGATG 2 cut(s) 346, 438
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 254, 336
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 33, 174, 215, 255
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 229
BspPI GGATC 1 cut(s) 41
BssMI GATC 4 cut(s) 33, 174, 215, 255
Bst4CI ACNGT 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 346, 438
BstHHI GCGC 2 cut(s) 355, 361
BstKTI GATC 4 cut(s) 36, 177, 218, 258
BstMBI GATC 4 cut(s) 33, 174, 215, 255
BstMWI GCNNNNNNNGC 2 cut(s) 150, 422
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 440
BtsCI GGATG 2 cut(s) 346, 438
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 170, 235
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 2 cut(s) 355, 361
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 9, 115, 222, 236, 401
CviKI_1 RGCY 5 cut(s) 9, 115, 222, 236, 401
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 35, 176, 217, 257
DpnII GATC 4 cut(s) 33, 174, 215, 255
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 53, 89, 91, 225
FatI CATG 1 cut(s) 51
FbaI TGATCA 2 cut(s) 174, 255
Fnu4HI GCNGC 2 cut(s) 234, 291
FokI GGATG 2 cut(s) 353, 425
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 234, 291
FspBI CTAG 1 cut(s) 56
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 2 cut(s) 354, 360
GluI GCNGC 2 cut(s) 234, 291
HhaI GCGC 2 cut(s) 355, 361
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 2 cut(s) 353, 359
HinP1I GCGC 2 cut(s) 353, 359
HinfI GANTC 3 cut(s) 167, 364, 373
HphI GGTGA 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 166, 260, 432
Hpy188III TCNNGA 2 cut(s) 178, 329
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 233, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 422
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 2 cut(s) 353, 359
Ksp22I TGATCA 2 cut(s) 174, 255
Kzo9I GATC 4 cut(s) 33, 174, 215, 255
LpnPI CCDG 2 cut(s) 411, 435
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 168, 343, 393
MalI GATC 4 cut(s) 35, 176, 217, 257
MboI GATC 4 cut(s) 33, 174, 215, 255
MboII GAAGA 2 cut(s) 203, 445
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 82, 185, 332
MlyI GAGTC 2 cut(s) 176, 382
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 174, 232, 314
MseI TTAA 2 cut(s) 104, 270
MspA1I CMGCKG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 150, 422
NdeII GATC 4 cut(s) 33, 174, 215, 255
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 168, 393
NsbI TGCGCA 1 cut(s) 360
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 235, 292
PleI GAGTC 2 cut(s) 175, 381
PpsI GAGTC 2 cut(s) 175, 381
Psp124BI GAGCTC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 104, 270
SatI GCNGC 2 cut(s) 234, 291
Sau3AI GATC 4 cut(s) 33, 174, 215, 255
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 2 cut(s) 176, 382
SduI GDGCHC 1 cut(s) 11
SetI ASST 4 cut(s) 11, 78, 224, 238
SfaNI GCATC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 82, 185, 332
SsiI CCGC 1 cut(s) 290
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 82, 185, 332
TatI WGTACW 1 cut(s) 146
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 104, 270
Tru9I TTAA 2 cut(s) 104, 270
TscAI CASTG 2 cut(s) 177, 235
TseFI GTSAC 2 cut(s) 168, 393
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 168, 393
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 177, 235
XapI RAATTY 2 cut(s) 82, 332
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.