Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0019804

Physical Location & Seq

Genomic Coordinates Reverse (-)

16863975 .. 16865267

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G213400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATCAAAGATATTCCCCACAAGGATCATGATCATGATCATACAGAAGCAGCTGCTGCTTGTTCTACTACTAGTCCACAAGCAACTGCACTCCAAATTGCCTCCTCTGTAACTGCAAGTGCAAGTGCAACTGCATATCAAAATAATAATAATATTGATCAAAGCCGGTCCTCCTCAACTACAAGTCCATTGACAGAGATACGGACATTGGTATACGGACCCGATACTAACTGCAACTGCTCTGAGAAACAAGAATCCCGCTTCATCAAACGAAAGAAGAAGATTGAAAAGATTAAGGCTGAAGAACAAAAGACGGTAGCGGATGCAGCAGGGCAGACCACTAAAGTAATTGGAGAGGGAAAGCCCATTGCTTCACCAACTATTCAGACCATCTCATCAGCAGATCCTATTGTGATTGCCGGAACTGCTGGAGCATTATTCCTCACATACCTTCTTCTTCCTCCCATCTGGTCTGCTCTCTCTTTTAGCCTCCGAGTTTACAAAGGTACATGCTTTTATTATGAAACAGAATTGCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

181

Amino Acids

19.45

Weight (kDa)

6.43

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019804)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G213300_v2.0.a1 Prupe.5G213400_v2.0.a1
rosa_rugosa	Rorug03G0249500 Rorug03G0249600
rosa_samantha	Rh1AG236800 Rh1BG083700 Rh2AG321200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	259, 320
AclWI	GGATC	2 cut(s)	33, 398
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	287, 539
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	2 cut(s)	33, 398
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	4 cut(s)	50, 53, 56, 326
AspS9I	GGNCC	2 cut(s)	168, 218
AsuHPI	GGTGA	1 cut(s)	366
AvaII	GGWCC	2 cut(s)	168, 218
BbvI	GCAGC	4 cut(s)	40, 43, 62, 338
BccI	CCATC	2 cut(s)	398, 473
BclI	TGATCA	4 cut(s)	3, 31, 37, 157
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	51, 54, 57, 327
BlsI	GCNGC	4 cut(s)	52, 55, 58, 328
Bme18I	GGWCC	2 cut(s)	168, 218
BmgT120I	GGNCC	2 cut(s)	168, 218
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	450
BsaBI	GATNNNNATC	2 cut(s)	30, 36
Bse118I	RCCGGY	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	2 cut(s)	30, 36
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	2 cut(s)	30, 36
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	2 cut(s)	94, 163
BseXI	GCAGC	4 cut(s)	40, 43, 62, 338
BsgI	GTGCAG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	166, 420
Bsp143I	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
BspACI	CCGC	2 cut(s)	259, 320
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	2 cut(s)	28, 34
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	33, 398
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
BssNAI	GTATAC	1 cut(s)	214
Bst1107I	GTATAC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	6 cut(s)	6, 28, 34, 40, 160, 406
BstMBI	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 326, 425
BstNSI	RCATGY	1 cut(s)	513
BstV1I	GCAGC	4 cut(s)	40, 43, 62, 338
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZ17I	GTATAC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	56
CciI	TCATGA	2 cut(s)	28, 34
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	168, 218
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	3 cut(s)	29, 35, 510
CviJI	RGCY	5 cut(s)	53, 165, 299, 364, 489
CviKI_1	RGCY	5 cut(s)	53, 165, 299, 364, 489
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	6 cut(s)	5, 27, 33, 39, 159, 405
DpnII	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
Eco47I	GGWCC	2 cut(s)	168, 218
Eco57I	CTGAAG	1 cut(s)	321
FaeI	CATG	3 cut(s)	32, 38, 513
FaiI	YATR	8 cut(s)	30, 36, 42, 136, 214, 448, 511, 522
FatI	CATG	3 cut(s)	28, 34, 509
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	4 cut(s)	3, 31, 37, 157
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	51, 54, 57, 327
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	51, 54, 57, 327
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	51, 54, 57, 327
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	2 cut(s)	166, 420
Hin1II	CATG	3 cut(s)	32, 38, 513
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	166, 420
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	3 cut(s)	77, 214, 499
Hpy188I	TCNGA	3 cut(s)	244, 387, 494
Hpy188III	TCNNGA	2 cut(s)	29, 35
Hpy8I	GTNNAC	3 cut(s)	77, 214, 499
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	7 cut(s)	89, 116, 122, 128, 134, 234, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 326, 425
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	32, 38, 513
Ksp22I	TGATCA	4 cut(s)	3, 31, 37, 157
Kzo9I	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	5 cut(s)	179, 315, 414, 433, 454
Lsp1109I	GCAGC	4 cut(s)	40, 43, 62, 338
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	6 cut(s)	5, 27, 33, 39, 159, 405
MboI	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
MboII	GAAGA	5 cut(s)	289, 292, 314, 446, 449
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	3 cut(s)	96, 348, 530
MnlI	CCTC	8 cut(s)	112, 115, 181, 184, 349, 452, 471, 500
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	166, 420
MwoI	GCNNNNNNNGC	3 cut(s)	56, 326, 425
NdeII	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
NlaIII	CATG	3 cut(s)	32, 38, 513
NlaIV	GGNNCC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	513
PagI	TCATGA	2 cut(s)	28, 34
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	52, 55, 58, 328
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	168, 218
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	51, 54, 57, 327
Sau3AI	GATC	6 cut(s)	3, 25, 31, 37, 157, 403
Sau96I	GGNCC	2 cut(s)	168, 218
SetI	ASST	3 cut(s)	55, 453, 508
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	2 cut(s)	168, 218
SmiMI	CAYNNNNRTG	1 cut(s)	33
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	3 cut(s)	96, 348, 530
SsiI	CCGC	2 cut(s)	259, 320
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	316
TasI	AATT	3 cut(s)	96, 348, 530
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	4 cut(s)	50, 53, 56, 326
TspDTI	ATGAA	2 cut(s)	253, 537
TspGWI	ACGGA	2 cut(s)	217, 231
VpaK11BI	GGWCC	2 cut(s)	168, 218
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.