Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0019804

Physical Location & Seq

Genomic Coordinates Forward (+)

23490787 .. 23494016

Gene Structure 3230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTCAAACTCAATTATAAACAAAAGGGTGCGGGTGCCTTGTCTACCCTCTCCGGCCAAGATTAATTTCAACTTGAGCAAGATACAGAGGATTAAGAAGCCTGAATCCAACAAGGTGGACCGAATCAGCGCCCTACCAGATGAAATTCTTGTGAATATAGTTGCCTTCTTGCCACTAGATGAAGCACAGGCTACGAGTATCCTTTCTAGGCGATGGCGTTATATCTGGAAGTCTGTGTTGGATTATACCATGACTCTCAACTTTGATGCTGAGAAGCATTTGTCCAATTTTGCATCCCGGGAAGAGTTGGCAATTCGTTGGTATGTCGATTGGGTGGATACAGTGTTGAACCAGTATACAGGCCGAAAAATGAAGCAGTTCAGGGTTTGTTATGATTTGGACAGCACGTTTTCAAGGTCAATTGATGGATGGATTCATTTTGCAATGACAAAAGGAGTTGAAATGCTTGAGTTAGACTTATTAGAATATGGTGTTACTCACCGTTTGGAGTATCCAATTTATACATTTCCCCACAGACTTTTAGGCATCATGAAAGAATCTGCTTGGAAGCACATCTGTTCTGATGTTCCTAGGCTAAGTCCTTGTGCATGCATTGGCTTTAAGTCCCTCAAAGTTCTTAGTTTGAAATGTGTTGATGTGGATGGACAAGTTCTTGAGTACATGTTTTCTAATTGTCCAGTTCTTGAACGATTATCACTAGGTTATTCCTCGAGCTTGGTTAGTCTAAGAGTTGTTGGTCCATCAATTGCATTGAAGTACTTAGAAATACGAGGATGTGCTAGACTTGAGAGCATTGAGATCTGTGACACAAACCTTGTTTCTTTTGTTTATTACGGAAATGAGATACACTTGATAGTTAGAAATGTACCACTCCTTGTTGAGGTATCAATTTGTGAGTCTTGTAGTAATGATTACATACAGGTTGCGTTCACCCAACTCTCATGCTGTCTCTCTCAACTAGAGATTCTCAAACTAATTGATGTCATACTGCCCTACAAGAGGAATCCTGTATTTCCTATATTCACAAATCTCAAGCATTTGGAATTAAGATTTTATGAAGATGATGATTGCATTCTTCTTCATTTAACTTCTTTCATCAAGGCATCCCCTTGCTTGCACAACCTTGTGCTGGAGTTGTACCCTTTAACATGCCGAAGAGAAATAGAATTTAGAAAAGCTGCCAAATGCTCCCATGATTACCTAAAGGTAGTGGAAATATTTGGATATCATGGACGCAAAAGTGATTGTGAACTGGTCAAGTTCTTGACAGAGATTGCTGTTAATTTGGAGAAAATTATTACTGATCCTGCTCATCCTGCTGAACGACATTACTGTTATCCTAAACACAGACGAAAGCCGGATATTGAAGTCGTGGCGAGGGCTGAACAGTCAAGTTATGATTATGCTACCATGGTAAAGAAAAAATTCCTTCGACTTGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

488

Amino Acids

56.46

Weight (kDa)

8.39

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	42 - 79	6.7e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	118 - 451	1.3e-40	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	141 - 258	1.3e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019804)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G213300_v2.0.a1 Prupe.5G213400_v2.0.a1
rosa_rugosa	Rorug03G0249500 Rorug03G0249600
rosa_samantha	Rh1AG236800 Rh1BG083700 Rh2AG321200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	2 cut(s)	43, 356
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	1319
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	3 cut(s)	144, 1187, 1445
AfaI	GTAC	4 cut(s)	680, 779, 888, 1160
AfiI	CCNNNNNNNGG	3 cut(s)	901, 1020, 1150
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	8 cut(s)	70, 349, 414, 461, 646, 707, 775, 1388
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 221, 253
AluBI	AGCT	2 cut(s)	735, 1199
AluI	AGCT	2 cut(s)	735, 1199
Alw26I	GTCTC	1 cut(s)	974
AlwI	GGATC	1 cut(s)	1319
Ama87I	CYCGRG	2 cut(s)	297, 730
AoxI	GGCC	2 cut(s)	54, 361
ApeKI	GCWGC	1 cut(s)	1199
ApoI	RAATTY	3 cut(s)	144, 1187, 1445
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	2 cut(s)	377, 1445
AspA2I	CCTAGG	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	118, 758
AsuC2I	CCSGG	2 cut(s)	298, 299
AsuHPI	GGTGA	2 cut(s)	491, 943
AvaI	CYCGRG	2 cut(s)	297, 730
AvaII	GGWCC	2 cut(s)	118, 758
AvrII	CCTAGG	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	1186
BccI	CCATC	5 cut(s)	207, 419, 423, 656, 769
BciVI	GTATCC	3 cut(s)	209, 331, 522
BcnI	CCSGG	2 cut(s)	298, 299
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	6 cut(s)	176, 207, 591, 719, 801, 980
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	3 cut(s)	209, 331, 522
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	1 cut(s)	1200
BlnI	CCTAGG	1 cut(s)	590
BlsI	GCNGC	1 cut(s)	1201
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	298, 299
Bme18I	GGWCC	2 cut(s)	118, 758
BmeT110I	CYCGRG	2 cut(s)	297, 730
BmgT120I	GGNCC	2 cut(s)	118, 758
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	298, 299
BmsI	GCATC	4 cut(s)	256, 302, 555, 1133
BpmI	CTGGAG	1 cut(s)	1172
BpuEI	CTTGAG	5 cut(s)	94, 488, 695, 827, 1037
BpuMI	CCSGG	2 cut(s)	298, 299
BsaJI	CCNNGG	3 cut(s)	297, 590, 1431
Bsc4I	CCNNNNNNNGG	3 cut(s)	901, 1020, 1150
Bse1I	ACTGG	3 cut(s)	352, 698, 1278
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	297, 590, 1431
BseGI	GGATG	6 cut(s)	293, 434, 667, 800, 1124, 1333
BseLI	CCNNNNNNNGG	3 cut(s)	901, 1020, 1150
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	352, 698, 1278
BseXI	GCAGC	1 cut(s)	1186
BshFI	GGCC	2 cut(s)	56, 363
BshNI	GGYRCC	1 cut(s)	34
BsiHKCI	CYCGRG	2 cut(s)	297, 730
BsiSI	CCGG	3 cut(s)	53, 298, 1379
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	901, 1020, 1150
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	1092
BsnI	GGCC	2 cut(s)	56, 363
BsoBI	CYCGRG	2 cut(s)	297, 730
Bsp143I	GATC	2 cut(s)	819, 1324
Bsp19I	CCATGG	1 cut(s)	1431
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	56, 363
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	1319
BspT107I	GGYRCC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	352, 698, 1278
BssECI	CCNNGG	3 cut(s)	297, 590, 1431
BssMI	GATC	2 cut(s)	819, 1324
BssNAI	GTATAC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	590, 1431
Bst1107I	GTATAC	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	343, 503, 1355, 1410
Bst6I	CTCTTC	2 cut(s)	297, 1171
BstC8I	GCNNGC	2 cut(s)	610, 1136
BstDEI	CTNAG	5 cut(s)	270, 596, 638, 746, 781
BstDSI	CCRYGG	1 cut(s)	1431
BstENI	CCTNNNNNAGG	2 cut(s)	899, 1018
BstF5I	GGATG	6 cut(s)	293, 434, 667, 800, 1124, 1333
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	822, 1327
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	2 cut(s)	819, 1324
BstMWI	GCNNNNNNNGC	1 cut(s)	1337
BstNSI	RCATGY	3 cut(s)	612, 685, 1173
BstSCI	CCNGG	2 cut(s)	296, 297
BstV1I	GCAGC	1 cut(s)	1186
BstX2I	RGATCY	1 cut(s)	819
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	819
BstZ17I	GTATAC	1 cut(s)	357
BsuI	GTATCC	3 cut(s)	209, 331, 522
BsuRI	GGCC	2 cut(s)	56, 363
BtgI	CCRYGG	1 cut(s)	1431
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	6 cut(s)	293, 434, 667, 800, 1124, 1333
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	610, 1136
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	118, 758
Cfr9I	CCCGGG	1 cut(s)	297
CseI	GACGC	1 cut(s)	1263
Csp6I	GTAC	4 cut(s)	679, 778, 887, 1159
CviAII	CATG	9 cut(s)	250, 550, 609, 682, 963, 1170, 1214, 1250, 1432
CviQI	GTAC	4 cut(s)	679, 778, 887, 1159
DdeI	CTNAG	5 cut(s)	270, 596, 638, 746, 781
DpnI	GATC	2 cut(s)	821, 1326
DpnII	GATC	2 cut(s)	819, 1324
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	297, 1171
EarI	CTCTTC	2 cut(s)	297, 1171
Eco130I	CCWWGG	2 cut(s)	590, 1431
Eco32I	GATATC	1 cut(s)	1247
Eco47I	GGWCC	2 cut(s)	118, 758
Eco88I	CYCGRG	2 cut(s)	297, 730
EcoNI	CCTNNNNNAGG	2 cut(s)	899, 1018
EcoRV	GATATC	1 cut(s)	1247
EcoT14I	CCWWGG	2 cut(s)	590, 1431
EcoT22I	ATGCAT	1 cut(s)	614
ErhI	CCWWGG	2 cut(s)	590, 1431
FaeI	CATG	9 cut(s)	253, 553, 612, 685, 966, 1173, 1217, 1253, 1435
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	9 cut(s)	249, 549, 608, 681, 962, 1169, 1213, 1249, 1431
FauI	CCCGC	1 cut(s)	24
FblI	GTMKAC	2 cut(s)	43, 356
Fnu4HI	GCNGC	1 cut(s)	1200
FokI	GGATG	6 cut(s)	280, 441, 674, 807, 1111, 1320
Fsp4HI	GCNGC	1 cut(s)	1200
FspBI	CTAG	6 cut(s)	176, 207, 591, 719, 801, 980
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	1200
GsuI	CTGGAG	1 cut(s)	1172
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	56, 363
HapII	CCGG	3 cut(s)	53, 298, 1379
HgaI	GACGC	1 cut(s)	1263
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	9 cut(s)	253, 553, 612, 685, 966, 1173, 1217, 1253, 1435
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	8 cut(s)	104, 123, 253, 433, 557, 917, 985, 1024
HpaII	CCGG	3 cut(s)	53, 298, 1379
HphI	GGTGA	2 cut(s)	491, 943
Hpy166II	GTNNAC	5 cut(s)	44, 118, 357, 951, 1271
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	5 cut(s)	226, 550, 674, 704, 1285
Hpy8I	GTNNAC	5 cut(s)	44, 118, 357, 951, 1271
HpyAV	CCTTC	2 cut(s)	175, 1460
HpyCH4III	ACNGT	4 cut(s)	343, 503, 1355, 1410
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	7 cut(s)	293, 443, 608, 612, 770, 1092, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1337
HpyF3I	CTNAG	5 cut(s)	270, 596, 638, 746, 781
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	9 cut(s)	253, 553, 612, 685, 966, 1173, 1217, 1253, 1435
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	819, 1324
LmnI	GCTCC	1 cut(s)	1214
Lsp1109I	GCAGC	1 cut(s)	1186
LweI	GCATC	4 cut(s)	256, 302, 555, 1133
MaeI	CTAG	6 cut(s)	176, 207, 591, 719, 801, 980
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	493, 824
MalI	GATC	2 cut(s)	821, 1326
MboI	GATC	2 cut(s)	819, 1324
MboII	GAAGA	5 cut(s)	314, 1088, 1091, 1091, 1188
MfeI	CAATTG	2 cut(s)	420, 765
MflI	RGATCY	1 cut(s)	819
MlyI	GAGTC	2 cut(s)	247, 926
MmeI	TCCRAC	2 cut(s)	132, 219
MnlI	CCTC	8 cut(s)	58, 81, 638, 739, 785, 895, 1014, 1392
Mph1103I	ATGCAT	1 cut(s)	614
MroXI	GAANNNNTTC	2 cut(s)	377, 1445
MseI	TTAA	7 cut(s)	63, 93, 621, 1067, 1106, 1166, 1302
MspI	CCGG	3 cut(s)	53, 298, 1379
MspR9I	CCNGG	2 cut(s)	298, 299
MunI	CAATTG	2 cut(s)	420, 765
Mva1269I	GAATGC	1 cut(s)	1092
MwoI	GCNNNNNNNGC	1 cut(s)	1337
NciI	CCSGG	2 cut(s)	298, 299
NcoI	CCATGG	1 cut(s)	1431
NdeII	GATC	2 cut(s)	819, 1324
NlaIII	CATG	9 cut(s)	253, 553, 612, 685, 966, 1173, 1217, 1253, 1435
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	614
NspI	RCATGY	3 cut(s)	612, 685, 1173
PaeI	GCATGC	1 cut(s)	612
PaeR7I	CTCGAG	1 cut(s)	730
PagI	TCATGA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	681
PctI	GAATGC	1 cut(s)	1092
PdmI	GAANNNNTTC	2 cut(s)	377, 1445
PfeI	GAWTC	6 cut(s)	104, 123, 433, 557, 985, 1024
PkrI	GCNGC	1 cut(s)	1201
PleI	GAGTC	2 cut(s)	247, 925
PpsI	GAGTC	2 cut(s)	247, 925
PscI	ACATGT	1 cut(s)	681
PshBI	ATTAAT	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	118, 758
PspXI	VCTCGAGB	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	819
RsaI	GTAC	4 cut(s)	680, 779, 888, 1160
RsaNI	GTAC	4 cut(s)	679, 778, 887, 1159
SaqAI	TTAA	7 cut(s)	63, 93, 621, 1067, 1106, 1166, 1302
SatI	GCNGC	1 cut(s)	1200
Sau3AI	GATC	2 cut(s)	819, 1324
Sau96I	GGNCC	2 cut(s)	118, 758
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	2 cut(s)	247, 926
ScrFI	CCNGG	2 cut(s)	298, 299
SfaNI	GCATC	4 cut(s)	256, 302, 555, 1133
Sfr274I	CTCGAG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	118, 758
SlaI	CTCGAG	1 cut(s)	730
SmaI	CCCGGG	1 cut(s)	299
SmlI	CTYRAG	6 cut(s)	73, 467, 674, 730, 806, 1052
SmoI	CTYRAG	6 cut(s)	73, 467, 674, 730, 806, 1052
SphI	GCATGC	1 cut(s)	612
SsiI	CCGC	1 cut(s)	31
SspI	AATATT	1 cut(s)	1239
SspMI	CTAG	6 cut(s)	176, 207, 591, 719, 801, 980
StyD4I	CCNGG	2 cut(s)	296, 297
StyI	CCWWGG	2 cut(s)	590, 1431
TaaI	ACNGT	4 cut(s)	343, 503, 1355, 1410
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	327, 731, 1453
TaqII	GACCGA	1 cut(s)	135
TatI	WGTACW	2 cut(s)	678, 777
TfiI	GAWTC	6 cut(s)	104, 123, 433, 557, 985, 1024
Tru1I	TTAA	7 cut(s)	63, 93, 621, 1067, 1106, 1166, 1302
Tru9I	TTAA	7 cut(s)	63, 93, 621, 1067, 1106, 1166, 1302
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	1199
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	8 cut(s)	156, 195, 386, 425, 566, 1091, 1092, 1105
TspGWI	ACGGA	1 cut(s)	870
TspMI	CCCGGG	1 cut(s)	297
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	118, 758
VspI	ATTAAT	1 cut(s)	63
XagI	CCTNNNNNAGG	2 cut(s)	899, 1018
XapI	RAATTY	3 cut(s)	144, 1187, 1445
XceI	RCATGY	3 cut(s)	612, 685, 1173
XhoI	CTCGAG	1 cut(s)	730
XmaI	CCCGGG	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	590
XmiI	GTMKAC	2 cut(s)	43, 356
XmnI	GAANNNNTTC	2 cut(s)	377, 1445
XspI	CTAG	6 cut(s)	176, 207, 591, 719, 801, 980
ZrmI	AGTACT	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.