Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019804

Physical Location & Seq

Genomic Coordinates Reverse (-)

44651007 .. 44654560

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGCAATTGCAAAGTTTTGATGGACAACCCAAGGCCACCAAGCATGAATATATTGATCGAAAGCATTTACAGACGATAGGTGATGCAGCAGGACAGACCACCAAATTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTCGTGATTACTGGAACTGTTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTCTTTCTTTTAACCTCAGAGGATACAAAGTATTGCCTCTCAATCCCATATCGAGATTGTTACCAAACTTCAATCCTGTAGTAAAGAGCCAACACCCACATTCTGGCATCCTTATGCAAGCATTAGATTTGGTGGGCATCAATGGATTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

130

Amino Acids

14.19

Weight (kDa)

9.01

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019804)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G213300_v2.0.a1 Prupe.5G213400_v2.0.a1
rosa_rugosa	Rorug03G0249500 Rorug03G0249600
rosa_samantha	Rh1AG236800 Rh1BG083700 Rh2AG321200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	161, 174
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	116, 310
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	89
AseI	ATTAAT	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	4 cut(s)	76, 109, 354, 384
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	58, 166
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	161, 174
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	58, 166
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	145, 190
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	61, 169
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	58, 166
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	357
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	3 cut(s)	38, 127, 327
CviKI_1	RGCY	3 cut(s)	38, 127, 327
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	60, 168
DpnII	GATC	2 cut(s)	58, 166
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	48, 54, 211, 287, 353
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	4 cut(s)	116, 148, 175, 291
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	145, 190
HpyCH4V	TGCA	3 cut(s)	13, 89, 355
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	58, 166
LpnPI	CCDG	5 cut(s)	78, 168, 183, 327, 327
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	4 cut(s)	76, 109, 354, 384
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	2 cut(s)	60, 168
MboI	GATC	2 cut(s)	58, 166
MboII	GAAGA	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	4 cut(s)	8, 107, 111, 228
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	215, 234, 251, 263, 285
MseI	TTAA	2 cut(s)	110, 249
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	8
NdeII	GATC	2 cut(s)	58, 166
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	110, 249
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	58, 166
SetI	ASST	2 cut(s)	85, 255
SfaNI	GCATC	4 cut(s)	76, 109, 354, 384
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	8, 107, 111, 228
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	145, 190
TaqI	TCGA	3 cut(s)	61, 147, 290
TasI	AATT	4 cut(s)	8, 107, 111, 228
Tru1I	TTAA	2 cut(s)	110, 249
Tru9I	TTAA	2 cut(s)	110, 249
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	17, 63, 126, 147
Van91I	CCANNNNNTGG	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.