Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0019804

Physical Location & Seq

Genomic Coordinates Reverse (-)

23501738 .. 23503012

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGATGGCAAGCCAGATTAGGCAAAGGCAAAGACATGAAAGGCCTTTATGTGGGAACATTTGATACTCAAGAGGAAGCGGCAAGGGCTTATGATATTGCAGTAATAAAATGTAGAGGAGGGTGGGAAGCAGTGACCAATTTTGATCTAAGCCACTATGATGTCGAAGGTATTCTTGAGAGCCCAAATATTCCAATTGAAAATGGTGCTTCAAAGTTCATAAGGTGGACTGCAGCTGATCATATCATCCAGAGCAGAAGAACCACTAACAATGTTGCCGTTTCACAACTACAAGTTGACAGCTCGGGTAATCACCCTAATATAACCCCAATAGCCCCACCATTATTTGAACCAATAGTGCAATCCCTAGAAACCCATTGCAATTCAAACCCAGAACAACAATATCCATGCCCGTCCCTCAATCCAAACCAAAATAATGACCAGATCCAAATATTCCAATTCCCGCAGTACTTTAAAAACCCTAACTTTGAATTTGATTATCTTCCTTGCTACCAGAAACCTAATTTCCCAATAAATCCTAGTTTCGGTAATTGGGGTAACCATGGTGAAAATGAGCAGATCGAGCCATCACTCCAGTTTCAACCTATTCTGACCCCAGAGAACCACGAGTTTCAGTTTCATCAGCATAACAGTGATAATTCCCAGCCCCATCTGCCTCAAAACCCTAGCTCCTCCAGTCTTCAAGACTTTCAGAACCCTAATTGCCATGAAAACCCTAATATTTTTGGTGAGTTGACTAACCTTCAAAGTGGTAGCGATATCAGGGAATTTCCCAGTGGTCAGGAACTAGTGGCGAGCTTCGCAATGATGGGGACGAACAAGAATCACGGTGATTGCACCAATACAGTAGAGGAAAATAGAAATTTTGCTGAAGACTTTAGGGTGGACAATCCAGACTTGGACATTTCATCTAGCAGCTGGTTCGAAATGTTAATGACCTTAAACAGTTCTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

326

Amino Acids

37.01

Weight (kDa)

4.65

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019804)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G213300_v2.0.a1 Prupe.5G213400_v2.0.a1
rosa_rugosa	Rorug03G0249500 Rorug03G0249600
rosa_samantha	Rh1AG236800 Rh1BG083700 Rh2AG321200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 464
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	3 cut(s)	491, 788, 883
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	52, 545
AgsI	TTSAA	8 cut(s)	200, 213, 350, 387, 491, 602, 704, 767
AhlI	ACTAGT	1 cut(s)	808
AluBI	AGCT	5 cut(s)	236, 303, 690, 819, 939
AluI	AGCT	5 cut(s)	236, 303, 690, 819, 939
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	233, 936
ApoI	RAATTY	3 cut(s)	491, 788, 883
Asp700I	GAANNNNTTC	1 cut(s)	171
AsuHPI	GGTGA	4 cut(s)	305, 578, 761, 863
AsuII	TTCGAA	1 cut(s)	945
AvaI	CYCGRG	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	692, 900
BbvI	GCAGC	2 cut(s)	245, 948
BccI	CCATC	3 cut(s)	595, 678, 823
BceAI	ACGGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	925, 959
BclI	TGATCA	1 cut(s)	238
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	5 cut(s)	368, 540, 687, 809, 933
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	3 cut(s)	81, 234, 937
BlsI	GCNGC	3 cut(s)	82, 235, 938
BmcAI	AGTACT	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	789
BpiI	GAAGAC	2 cut(s)	692, 900
BpmI	CTGGAG	2 cut(s)	578, 679
Bpu14I	TTCGAA	1 cut(s)	945
BpuEI	CTTGAG	2 cut(s)	54, 197
BsaJI	CCNNGG	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 545
Bse1I	ACTGG	3 cut(s)	595, 696, 795
Bse3DI	GCAATG	2 cut(s)	376, 831
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	52, 545
BseMI	GCAATG	2 cut(s)	376, 831
BseNI	ACTGG	3 cut(s)	595, 696, 795
BseRI	GAGGAG	2 cut(s)	132, 682
BseXI	GCAGC	2 cut(s)	245, 948
BseYI	CCCAGC	1 cut(s)	663
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	304
BslFI	GGGAC	2 cut(s)	400, 847
BslI	CCNNNNNNNGG	2 cut(s)	52, 545
BsmFI	GGGAC	2 cut(s)	400, 847
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	945
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	145, 238, 444, 579
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	2 cut(s)	80, 464
BspANI	GGCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	945
BsrDI	GCAATG	2 cut(s)	376, 831
BsrI	ACTGG	3 cut(s)	595, 696, 795
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	4 cut(s)	145, 238, 444, 579
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	626
Bst4CI	ACNGT	4 cut(s)	653, 851, 868, 968
BstBI	TTCGAA	1 cut(s)	945
BstC8I	GCNNGC	2 cut(s)	12, 817
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	562
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	148, 241, 447, 582
BstMBI	GATC	4 cut(s)	145, 238, 444, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 583, 673, 821
BstPI	GGTNACC	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	245, 948
BstV2I	GAAGAC	2 cut(s)	692, 900
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 658, 802
Cac8I	GCNNGC	2 cut(s)	12, 817
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	37, 408, 563, 728
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	147, 240, 446, 581
DpnII	GATC	4 cut(s)	145, 238, 444, 579
DraI	TTTAAA	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	912
Eco88I	CYCGRG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	4 cut(s)	40, 411, 566, 731
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	400, 847
FatI	CATG	4 cut(s)	36, 407, 562, 727
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	81, 234, 937
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	81, 234, 937
FspBI	CTAG	5 cut(s)	368, 540, 687, 809, 933
GluI	GCNGC	3 cut(s)	81, 234, 937
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	2 cut(s)	578, 679
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	40, 411, 566, 731
HincII	GTYRAC	2 cut(s)	298, 756
HindII	GTYRAC	2 cut(s)	298, 756
HinfI	GANTC	1 cut(s)	844
HphI	GGTGA	4 cut(s)	305, 578, 761, 863
Hpy166II	GTNNAC	4 cut(s)	228, 298, 756, 907
Hpy188I	TCNGA	4 cut(s)	612, 714, 973, 980
Hpy188III	TCNNGA	6 cut(s)	71, 176, 250, 704, 803, 914
Hpy8I	GTNNAC	4 cut(s)	228, 298, 756, 907
HpyAV	CCTTC	2 cut(s)	161, 773
HpyCH4III	ACNGT	4 cut(s)	653, 851, 868, 968
HpyCH4V	TGCA	5 cut(s)	101, 233, 361, 381, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 583, 673, 821
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	40, 411, 566, 731
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	145, 238, 444, 579
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	2 cut(s)	245, 948
MaeI	CTAG	5 cut(s)	368, 540, 687, 809, 933
MaeIII	GTNAC	2 cut(s)	133, 557
MalI	GATC	4 cut(s)	147, 240, 446, 581
MboI	GATC	4 cut(s)	145, 238, 444, 579
MboII	GAAGA	4 cut(s)	270, 494, 692, 905
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	67, 110, 113, 428, 687, 703, 865
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	3 cut(s)	474, 953, 962
MslI	CAYNNNNRTG	2 cut(s)	159, 651
MspA1I	CMGCKG	2 cut(s)	236, 939
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	86, 583, 673, 821
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	4 cut(s)	145, 238, 444, 579
NlaIII	CATG	4 cut(s)	40, 411, 566, 731
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	945
PceI	AGGCCT	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	844
PkrI	GCNGC	3 cut(s)	82, 235, 938
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	663
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	444
PvuII	CAGCTG	2 cut(s)	236, 939
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	159, 651
SaqAI	TTAA	3 cut(s)	474, 953, 962
SatI	GCNGC	3 cut(s)	81, 234, 937
Sau3AI	GATC	4 cut(s)	145, 238, 444, 579
ScaI	AGTACT	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	945
SmiMI	CAYNNNNRTG	2 cut(s)	159, 651
SmlI	CTYRAG	2 cut(s)	69, 176
SmoI	CTYRAG	2 cut(s)	69, 176
SpeI	ACTAGT	1 cut(s)	808
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	80, 464
SspI	AATATT	3 cut(s)	190, 453, 742
SspMI	CTAG	5 cut(s)	368, 540, 687, 809, 933
StuI	AGGCCT	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	4 cut(s)	653, 851, 868, 968
TaqI	TCGA	3 cut(s)	165, 582, 945
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	844
Tru1I	TTAA	3 cut(s)	474, 953, 962
Tru9I	TTAA	3 cut(s)	474, 953, 962
TscAI	CASTG	3 cut(s)	138, 658, 802
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	233, 936
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	53, 208, 629, 744, 918
TspRI	CASTG	3 cut(s)	138, 658, 802
XapI	RAATTY	3 cut(s)	491, 788, 883
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	5 cut(s)	368, 540, 687, 809, 933
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.