Prupe.5G219300_v2.0.a1

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0021870
Physical Location & Seq
Reverse (-)
17123254 .. 17124535
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G219300.1

Sequence Viewer

Length: 579 bp
ATGCATCCTAATAACAATAGTGATCCTAAACAAGCTCCACAAGCAGCAGCATACGGCGGTTATCAGCCACAGGCGGCACCAGCAGCAGCAGCATACGGTGGTTATCAACAACAGGCGGCACCTCCACACGCAGCAGCAGCATATGGCTATCAACAGGGGACGCCTCAATGGACGACAGGTCTATGTGGTTGCTTTGAAGATCCTTCCAATTGTTTGATGACCTGCTGCTGTCCCTGTGTAACCTTTGGCCAAAATGCTGAGATCATTGATAAAGGAACAACGTCTTGTGCTTTTGCGGGTTTAATCTATCATGCTCTTTCCTATGTGGGGTGTTCTTGTTTGTTCTCGTTCCCCTATCGATCCAAACTGAGAGGCCTATATTCATTGCCGGAAGATCCATGTGTAGACTGCTGTGTCCATTGTTTGCTTCCCACATGTGCTATTTGTCAAGAGTACCGGGAGCTCAAGAACCGTGGACAAGACCCCTCCATAGGTTGGATCGCCAATGCTCAGAAAATGAACCAAGGTCAAGCTGGAAACCCTGCACCTCCGTACATCACGCCAGGCATGTCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

193

Amino Acids

20.51

Weight (kDa)

6.38

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68630
malus_domestica MD06G1212800.v1.1
prunus_persica Prupe.5G219300_v2.0.a1
pyrus_communis pycom06g19030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 76, 118
AccB7I CCANNNNNTGG 1 cut(s) 495
AccI GTMKAC 1 cut(s) 405
AciI CCGC 4 cut(s) 57, 74, 116, 296
AclWI GGATC 5 cut(s) 17, 194, 354, 389, 506
AcoI YGGCCR 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 455, 554
AfiI CCNNNNNNNGG 3 cut(s) 327, 491, 495
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 1 cut(s) 197
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 3 cut(s) 35, 463, 533
AluI AGCT 3 cut(s) 35, 463, 533
Alw21I GWGCWC 1 cut(s) 465
AlwI GGATC 5 cut(s) 17, 194, 354, 389, 506
AoxI GGCC 2 cut(s) 247, 373
ApeKI GCWGC 9 cut(s) 44, 47, 83, 86, 89, 131, 134, 137, 225
AsuC2I CCSGG 1 cut(s) 458
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 2 cut(s) 76, 118
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 9 cut(s) 56, 59, 95, 98, 101, 143, 146, 149, 212
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 458, 564
BmeRI GACNNNNNGTC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 78, 120
BmrFI CCNGG 2 cut(s) 458, 564
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 472, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 491, 495
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 564
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 472, 523
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 3 cut(s) 327, 491, 495
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 3 cut(s) 249, 359, 524
BseXI GCAGC 9 cut(s) 56, 59, 95, 98, 101, 143, 146, 149, 212
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 249, 375
BshNI GGYRCC 2 cut(s) 76, 118
BshVI ATCGAT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 389, 457
BslFI GGGAC 2 cut(s) 172, 216
BslI CCNNNNNNNGG 3 cut(s) 327, 491, 495
BsmFI GGGAC 2 cut(s) 172, 216
BsnI GGCC 2 cut(s) 249, 375
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 6 cut(s) 22, 199, 261, 359, 394, 498
BspACI CCGC 4 cut(s) 57, 74, 116, 296
BspANI GGCC 2 cut(s) 249, 375
BspCNI CTCAG 3 cut(s) 250, 360, 523
BspDI ATCGAT 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 78, 120
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 5 cut(s) 17, 194, 354, 389, 506
BspT107I GGYRCC 2 cut(s) 76, 118
BsrDI GCAATG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 472, 523
BssMI GATC 6 cut(s) 22, 199, 261, 359, 394, 498
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 2 cut(s) 98, 473
BstACI GRCGYC 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 258, 368, 510
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 6 cut(s) 25, 202, 264, 362, 397, 501
BstMBI GATC 6 cut(s) 22, 199, 261, 359, 394, 498
BstMWI GCNNNNNNNGC 5 cut(s) 41, 80, 83, 89, 137
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 438, 571
BstSCI CCNGG 2 cut(s) 456, 562
BstV1I GCAGC 9 cut(s) 56, 59, 95, 98, 101, 143, 146, 149, 212
BstX2I RGATCY 2 cut(s) 199, 394
BstYI RGATCY 2 cut(s) 199, 394
Bsu15I ATCGAT 1 cut(s) 358
BsuRI GGCC 2 cut(s) 249, 375
BsuTUI ATCGAT 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 472
BtsCI GGATG 1 cut(s) 4
BveI ACCTGC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 358
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 454, 553
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 4 cut(s) 311, 399, 435, 568
CviJI RGCY 7 cut(s) 35, 67, 147, 249, 375, 463, 533
CviKI_1 RGCY 7 cut(s) 35, 67, 147, 249, 375, 463, 533
CviQI GTAC 2 cut(s) 454, 553
DdeI CTNAG 3 cut(s) 258, 368, 510
DpnI GATC 6 cut(s) 24, 201, 263, 361, 396, 500
DpnII GATC 6 cut(s) 22, 199, 261, 359, 394, 498
DrdI GACNNNNNNGTC 1 cut(s) 413
DriI GACNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 247
Eam1105I GACNNNNNGTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 523
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 4 cut(s) 314, 402, 438, 571
FaqI GGGAC 2 cut(s) 172, 216
FatI CATG 4 cut(s) 310, 398, 434, 567
FauI CCCGC 1 cut(s) 289
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 405
FriOI GRGCYC 1 cut(s) 465
HaeIII GGCC 2 cut(s) 249, 375
HapII CCGG 2 cut(s) 389, 457
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 4 cut(s) 314, 402, 438, 571
HpaII CCGG 2 cut(s) 389, 457
Hpy166II GTNNAC 2 cut(s) 406, 476
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 2 cut(s) 449, 466
Hpy8I GTNNAC 2 cut(s) 406, 476
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 98, 473
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 4, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 80, 83, 89, 137
HpyF3I CTNAG 3 cut(s) 258, 368, 510
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 4 cut(s) 314, 402, 438, 571
Kzo9I GATC 6 cut(s) 22, 199, 261, 359, 394, 498
LmnI GCTCC 2 cut(s) 40, 460
Lsp1109I GCAGC 9 cut(s) 56, 59, 95, 98, 101, 143, 146, 149, 212
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 238
MalI GATC 6 cut(s) 24, 201, 263, 361, 396, 500
MboI GATC 6 cut(s) 22, 199, 261, 359, 394, 498
MboII GAAGA 2 cut(s) 209, 404
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 2 cut(s) 199, 394
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 5 cut(s) 132, 174, 365, 496, 558
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 2 cut(s) 389, 457
MspR9I CCNGG 2 cut(s) 458, 564
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 5 cut(s) 41, 80, 83, 89, 137
NciI CCSGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 22, 199, 261, 359, 394, 498
NlaIII CATG 4 cut(s) 314, 402, 438, 571
NlaIV GGNNCC 2 cut(s) 78, 120
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 438, 571
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 495
PscI ACATGT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 78, 120
PsuI RGATCY 2 cut(s) 199, 394
RsaI GTAC 2 cut(s) 455, 554
RsaNI GTAC 2 cut(s) 454, 553
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 6 cut(s) 22, 199, 261, 359, 394, 498
ScrFI CCNGG 2 cut(s) 458, 564
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 208
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 4 cut(s) 57, 74, 116, 296
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 456, 562
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 98, 473
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 77, 119
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseI GCWGC 9 cut(s) 44, 47, 83, 86, 89, 131, 134, 137, 225
TspDTI ATGAA 2 cut(s) 372, 533
TspGWI ACGGA 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 495
XceI RCATGY 2 cut(s) 438, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.