pycom06g19030

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021870
Physical Location & Seq
Reverse (-)
22562816 .. 22563705
890 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19030.2

Sequence Viewer

Length: 468 bp
ATGCATCCTAATTACAACAGTGATCCTAAACAAGCTCCACAAGGAGGAGCATATGGTTATCAGCAGGCCGCGCCACCACAGGCGGTGCCTCCACAGGCAGCAACTTACGGCTACCAACAACAGGGGCCGCCACAATGGACAACAGGTCTTTGTGGTTGCTTTGAAGATCCTGGCAGTTCGTGCGCTTTCGGGGGTTTGATCTACTTTGCTCTTGCCTATGTGGGGTGTGCTTGTTTGTACTCGTTCTCCTTTCGATCCAAACTGAGAGGTCTCTACGCATTGCCTGAAGATCCATGTGCGGACTGTTGTGTGCATTGCTTGCTTCCTTGTTGTGCTATTTCCCAGGAGTACCGGGAGCTCAAAAACCGCGGATTAGACCCCTCCATGGGTTGGATCGCCAATGCTCAGAAAATGAACCAAGGTGGAAACCCTGCACCTCCATACGTCACACCGGGAATGTACCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

156

Amino Acids

16.76

Weight (kDa)

6.67

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68630
malus_domestica MD06G1212800.v1.1
prunus_persica Prupe.5G219300_v2.0.a1
pyrus_communis pycom06g19030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AccB7I CCANNNNNTGG 1 cut(s) 390
AccII CGCG 2 cut(s) 71, 369
AciI CCGC 6 cut(s) 69, 83, 128, 299, 367, 369
AclWI GGATC 5 cut(s) 17, 161, 249, 284, 401
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 239, 350, 461
AfiI CCNNNNNNNGG 6 cut(s) 44, 121, 222, 385, 386, 390
AgsI TTSAA 1 cut(s) 164
AhdI GACNNNNNGTC 1 cut(s) 144
AjnI CCWGG 2 cut(s) 169, 342
AluBI AGCT 2 cut(s) 35, 358
AluI AGCT 2 cut(s) 35, 358
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 5 cut(s) 17, 161, 249, 284, 401
AoxI GGCC 2 cut(s) 66, 125
ApeKI GCWGC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 73, 185
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 353, 453
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 171, 344
BcnI CCSGG 2 cut(s) 353, 453
BcoDI GTCTC 1 cut(s) 275
BisI GCNGC 3 cut(s) 69, 99, 128
BlsI GCNGC 3 cut(s) 70, 100, 129
Bme1390I CCNGG 4 cut(s) 171, 344, 353, 453
BmeRI GACNNNNNGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 87, 126
BmrFI CCNGG 4 cut(s) 171, 344, 353, 453
BmsI GCATC 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 353, 453
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 342, 367, 384, 418
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 121, 222, 385, 386, 390
Bse3DI GCAATG 2 cut(s) 278, 313
BseBI CCWGG 2 cut(s) 171, 344
BseDI CCNNGG 4 cut(s) 342, 367, 384, 418
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 6 cut(s) 44, 121, 222, 385, 386, 390
BseMI GCAATG 2 cut(s) 278, 313
BseMII CTCAG 2 cut(s) 254, 419
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 71, 369
BshFI GGCC 2 cut(s) 68, 127
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 2 cut(s) 352, 452
BslI CCNNNNNNNGG 6 cut(s) 44, 121, 222, 385, 386, 390
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 2 cut(s) 68, 127
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 6 cut(s) 22, 166, 198, 254, 289, 393
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 6 cut(s) 69, 83, 128, 299, 367, 369
BspANI GGCC 2 cut(s) 68, 127
BspCNI CTCAG 2 cut(s) 255, 418
BspFNI CGCG 2 cut(s) 71, 369
BspLI GGNNCC 2 cut(s) 87, 126
BspPI GGATC 5 cut(s) 17, 161, 249, 284, 401
BspT107I GGYRCC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 278, 313
BssECI CCNNGG 4 cut(s) 342, 367, 384, 418
BssMI GATC 6 cut(s) 22, 166, 198, 254, 289, 393
BssT1I CCWWGG 2 cut(s) 384, 418
Bst2UI CCWGG 2 cut(s) 171, 344
Bst4CI ACNGT 3 cut(s) 20, 305, 464
BstAPI GCANNNNNTGC 2 cut(s) 180, 319
BstC8I GCNNGC 2 cut(s) 66, 320
BstDEI CTNAG 2 cut(s) 263, 405
BstDSI CCRYGG 2 cut(s) 367, 384
BstF5I GGATG 1 cut(s) 4
BstFNI CGCG 2 cut(s) 71, 369
BstHHI GCGC 2 cut(s) 73, 185
BstKTI GATC 6 cut(s) 25, 169, 201, 257, 292, 396
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 6 cut(s) 22, 166, 198, 254, 289, 393
BstMWI GCNNNNNNNGC 3 cut(s) 70, 180, 319
BstNI CCWGG 2 cut(s) 171, 344
BstSCI CCNGG 4 cut(s) 169, 342, 351, 451
BstUI CGCG 2 cut(s) 71, 369
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 166, 289
BstYI RGATCY 2 cut(s) 166, 289
BsuRI GGCC 2 cut(s) 68, 127
BtgI CCRYGG 2 cut(s) 367, 384
BtsCI GGATG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 66, 320
CfoI GCGC 2 cut(s) 73, 185
Cfr13I GGNCC 1 cut(s) 125
Cfr42I CCGCGG 1 cut(s) 370
Csp6I GTAC 3 cut(s) 238, 349, 460
CviAII CATG 2 cut(s) 294, 385
CviJI RGCY 5 cut(s) 35, 68, 111, 127, 358
CviKI_1 RGCY 5 cut(s) 35, 68, 111, 127, 358
CviQI GTAC 3 cut(s) 238, 349, 460
DdeI CTNAG 2 cut(s) 263, 405
DpnI GATC 6 cut(s) 24, 168, 200, 256, 291, 395
DpnII GATC 6 cut(s) 22, 166, 198, 254, 289, 393
DriI GACNNNNNGTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 384, 418
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 169, 342
EcoT14I CCWWGG 2 cut(s) 384, 418
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 384, 418
FaeI CATG 2 cut(s) 297, 388
FaiI YATR 6 cut(s) 52, 54, 219, 295, 386, 442
FatI CATG 2 cut(s) 293, 384
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 69, 99, 128
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 3 cut(s) 69, 99, 128
GlaI GCGC 2 cut(s) 72, 184
GluI GCNGC 3 cut(s) 69, 99, 128
HaeIII GGCC 2 cut(s) 68, 127
HapII CCGG 2 cut(s) 352, 452
HhaI GCGC 2 cut(s) 73, 185
Hin1II CATG 2 cut(s) 297, 388
Hin6I GCGC 2 cut(s) 71, 183
HinP1I GCGC 2 cut(s) 71, 183
HpaII CCGG 2 cut(s) 352, 452
Hpy188I TCNGA 1 cut(s) 408
HpyCH4III ACNGT 3 cut(s) 20, 305, 464
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 3 cut(s) 4, 313, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 180, 319
HpyF3I CTNAG 2 cut(s) 263, 405
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 2 cut(s) 297, 388
HspAI GCGC 2 cut(s) 71, 183
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 6 cut(s) 22, 166, 198, 254, 289, 393
LmnI GCTCC 3 cut(s) 40, 47, 355
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 445
MalI GATC 6 cut(s) 24, 168, 200, 256, 291, 395
MboI GATC 6 cut(s) 22, 166, 198, 254, 289, 393
MboII GAAGA 2 cut(s) 176, 299
MflI RGATCY 2 cut(s) 166, 289
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 5 cut(s) 38, 99, 260, 391, 447
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 2 cut(s) 352, 452
MspR9I CCNGG 4 cut(s) 171, 344, 353, 453
MvaI CCWGG 2 cut(s) 171, 344
MvnI CGCG 2 cut(s) 71, 369
MwoI GCNNNNNNNGC 3 cut(s) 70, 180, 319
NciI CCSGG 2 cut(s) 353, 453
NcoI CCATGG 1 cut(s) 384
NdeI CATATG 1 cut(s) 52
NdeII GATC 6 cut(s) 22, 166, 198, 254, 289, 393
NlaIII CATG 2 cut(s) 297, 388
NlaIV GGNNCC 2 cut(s) 87, 126
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 70, 100, 129
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 169, 342
PspGI CCWGG 2 cut(s) 169, 342
PspN4I GGNNCC 2 cut(s) 87, 126
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 2 cut(s) 166, 289
RsaI GTAC 3 cut(s) 239, 350, 461
RsaNI GTAC 3 cut(s) 238, 349, 460
SacI GAGCTC 1 cut(s) 360
SacII CCGCGG 1 cut(s) 370
SatI GCNGC 3 cut(s) 69, 99, 128
Sau3AI GATC 6 cut(s) 22, 166, 198, 254, 289, 393
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 4 cut(s) 171, 344, 353, 453
SduI GDGCHC 1 cut(s) 360
SetI ASST 7 cut(s) 37, 148, 271, 360, 424, 439, 447
SfaNI GCATC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 370
Sse9I AATT 1 cut(s) 10
SsiI CCGC 6 cut(s) 69, 83, 128, 299, 367, 369
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 4 cut(s) 169, 342, 351, 451
StyI CCWWGG 2 cut(s) 384, 418
TaaI ACNGT 3 cut(s) 20, 305, 464
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 253
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 237
TauI GCSGC 2 cut(s) 71, 130
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.