Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016482

Physical Location & Seq

Genomic Coordinates Forward (+)

18036906 .. 18039108

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTGAGCAGCTAACCGAGGAGCAGATCGCCGAGTTCAAGGAAGCTTTTTGCCTCTTTGACAAAGATGGCGATGGTTGCATCACTACCAAAGAGTTGGGGACTGTGATGAGATCTCTGGGACAAAATCCCACTGAGGCTGAATTGCAGGACATGATCAACGAAGTTGATGCTGACCAGAATGGCACAATTGATTTCTCTGAGTTTCTGAATTTGATGGCAAGGAAGATGAAGGATACTGATTCTGAGGAGGAACTCAGAGAAGCTTTCAAGGTCTTTGATAAGGACCAGAATGGCTTTATTTCTGCTGCTGAGCTTCGACATGTAATGGCAAATCTTGGGGAGAAACTGACTGATGAAGAAGTGGATGAAATGATTCGTGAAGCAGATGAAGATGGCGATGGGCAGGTGAACTATGAGGAGTTTGTGAGAATGATGCTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

150

Amino Acids

17.02

Weight (kDa)

4.13

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17810
malus_domestica	MD06G1234300.v1.1 MD14G1241000.v1.1
prunus_persica	Prupe.5G238800_v2.0.a1
pyrus_communis	pycom06g20900 pycom14g20250
rosa_chinensis	RchiOBHm_Chr7g0177771
rosa_laevigata	RLG00000005505
rosa_multiflora	Rmu_sc0006214.1_g000014
rosa_roxburghii	Rroxscaffold_3G00275570
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009000 Rh7BG009100 Rh7DG009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	40, 271
AluBI	AGCT	4 cut(s)	13, 47, 266, 316
AluI	AGCT	4 cut(s)	13, 47, 266, 316
ApeKI	GCWGC	2 cut(s)	10, 308
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	22, 295
BccI	CCATC	5 cut(s)	62, 68, 211, 389, 395
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciVI	GTATCC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	2 cut(s)	11, 309
BlpI	GCTNAGC	2 cut(s)	6, 312
BlsI	GCNGC	2 cut(s)	12, 310
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	90, 160, 426
Bpu1102I	GCTNAGC	2 cut(s)	6, 312
BsaJI	CCNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	5 cut(s)	126, 192, 237, 271, 303
BseRI	GAGGAG	3 cut(s)	35, 263, 434
BseXI	GCAGC	2 cut(s)	22, 295
BslFI	GGGAC	2 cut(s)	115, 135
BsmFI	GGGAC	2 cut(s)	115, 135
Bsp143I	GATC	3 cut(s)	27, 113, 156
Bsp1720I	GCTNAGC	2 cut(s)	6, 312
BspCNI	CTCAG	5 cut(s)	127, 193, 238, 270, 304
BspMI	ACCTGC	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	27, 113, 156
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	6 cut(s)	6, 135, 201, 246, 257, 312
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	3 cut(s)	30, 116, 159
BstMBI	GATC	3 cut(s)	27, 113, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	22, 295
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	229
BtgZI	GCGATG	2 cut(s)	87, 414
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	2 cut(s)	154, 323
CviJI	RGCY	7 cut(s)	5, 13, 47, 140, 266, 297, 316
CviKI_1	RGCY	7 cut(s)	5, 13, 47, 140, 266, 297, 316
DdeI	CTNAG	6 cut(s)	6, 135, 201, 246, 257, 312
DpnI	GATC	3 cut(s)	29, 115, 158
DpnII	GATC	3 cut(s)	27, 113, 156
Eco47I	GGWCC	1 cut(s)	286
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	3 cut(s)	155, 324, 417
FaqI	GGGAC	2 cut(s)	115, 135
FatI	CATG	2 cut(s)	153, 322
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	11, 309
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	11, 309
GluI	GCNGC	2 cut(s)	11, 309
Hin1II	CATG	2 cut(s)	157, 326
HindIII	AAGCTT	2 cut(s)	45, 264
HinfI	GANTC	2 cut(s)	242, 376
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	202, 210, 247, 260
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	81, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	6 cut(s)	6, 135, 201, 246, 257, 312
Hsp92II	CATG	2 cut(s)	157, 326
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	27, 113, 156
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	104, 134, 191, 302, 392
Lsp1109I	GCAGC	2 cut(s)	22, 295
LweI	GCATC	3 cut(s)	90, 160, 426
MalI	GATC	3 cut(s)	29, 115, 158
MboI	GATC	3 cut(s)	27, 113, 156
MboII	GAAGA	3 cut(s)	238, 371, 404
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	3 cut(s)	143, 189, 211
MnlI	CCTC	6 cut(s)	13, 65, 130, 241, 244, 412
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	441
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	3 cut(s)	27, 113, 156
NlaIII	CATG	2 cut(s)	157, 326
NmeAIII	GCCGAG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	397
PciI	ACATGT	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	242, 376
PkrI	GCNGC	2 cut(s)	12, 310
PscI	ACATGT	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	11, 309
Sau3AI	GATC	3 cut(s)	27, 113, 156
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	6 cut(s)	15, 49, 268, 276, 318, 411
SfaNI	GCATC	3 cut(s)	90, 160, 426
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	3 cut(s)	143, 189, 211
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	319
TasI	AATT	3 cut(s)	143, 189, 211
TfiI	GAWTC	2 cut(s)	242, 376
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	10, 308
TspDTI	ATGAA	4 cut(s)	245, 372, 384, 405
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.