Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016482

Physical Location & Seq

Genomic Coordinates Forward (+)

23771416 .. 23772963

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCAGAGCAGCTAACGGAGGAGCAGATCGCCGAGTTCAAGGAAGCTTTTTGCCTCTTTGACAAAGATGGCGATGGTTGCATCACTACCAAAGAGTTGGGAACTGTGATGAGATCTTTCGGACAGAATCCCACTGAGGCTGAATTGCAGGACATGATCAGTGAAGTTGATGCTGATCAGAATGGCACAATCGATTTCTCCGAGTTTCTGAATTTGATGGCGAGGAAGATGAAGGATACTGATTCCGATGAGGAACTCAAAGAAGCTTTCAAGGTCTTTGACAAGGACCAGAATGGCTTCATTTCTGCTGCTGAGCTTCGACATGTAATGGCGAATCTCGGTGAGAAACTGACGGATGAAGAAGTGAATGAAATGATCTGTGAAGCGGACGAAGATGGCGATGGCCAGGTGAACTATGAGGAGTTTGTGAGGATGATGCTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

150

Amino Acids

16.93

Weight (kDa)

4.1

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17810
malus_domestica	MD06G1234300.v1.1 MD14G1241000.v1.1
prunus_persica	Prupe.5G238800_v2.0.a1
pyrus_communis	pycom06g20900 pycom14g20250
rosa_chinensis	RchiOBHm_Chr7g0177771
rosa_laevigata	RLG00000005505
rosa_multiflora	Rmu_sc0006214.1_g000014
rosa_roxburghii	Rroxscaffold_3G00275570
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009000 Rh7BG009100 Rh7DG009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	40, 271
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	4 cut(s)	13, 47, 266, 316
AluI	AGCT	4 cut(s)	13, 47, 266, 316
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	10, 308
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	353, 421
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	22, 295
BccI	CCATC	5 cut(s)	62, 68, 211, 389, 395
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	229
BclI	TGATCA	2 cut(s)	156, 175
BfuI	GTATCC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	2 cut(s)	11, 309
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	2 cut(s)	12, 310
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	90, 160, 426
Bpu1102I	GCTNAGC	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	361, 438
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	126, 303
BseRI	GAGGAG	2 cut(s)	35, 434
BseXI	GCAGC	2 cut(s)	22, 295
BshFI	GGCC	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	192
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	5 cut(s)	27, 113, 156, 175, 375
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	127, 304
BspDI	ATCGAT	1 cut(s)	192
BssMI	GATC	5 cut(s)	27, 113, 156, 175, 375
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	135, 312
BstF5I	GGATG	2 cut(s)	361, 438
BstKTI	GATC	5 cut(s)	30, 116, 159, 178, 378
BstMBI	GATC	5 cut(s)	27, 113, 156, 175, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	22, 295
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	2 cut(s)	87, 414
BtsCI	GGATG	2 cut(s)	361, 438
BtsIMutI	CAGTG	2 cut(s)	132, 166
Cfr13I	GGNCC	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	2 cut(s)	154, 323
CviJI	RGCY	7 cut(s)	13, 47, 140, 266, 297, 316, 405
CviKI_1	RGCY	7 cut(s)	13, 47, 140, 266, 297, 316, 405
DdeI	CTNAG	2 cut(s)	135, 312
DpnI	GATC	5 cut(s)	29, 115, 158, 177, 377
DpnII	GATC	5 cut(s)	27, 113, 156, 175, 375
EaeI	YGGCCR	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	3 cut(s)	155, 324, 417
FatI	CATG	2 cut(s)	153, 322
FbaI	TGATCA	2 cut(s)	156, 175
Fnu4HI	GCNGC	2 cut(s)	11, 309
FokI	GGATG	2 cut(s)	368, 445
Fsp4HI	GCNGC	2 cut(s)	11, 309
GluI	GCNGC	2 cut(s)	11, 309
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	157, 326
HindIII	AAGCTT	2 cut(s)	45, 264
HinfI	GANTC	3 cut(s)	127, 242, 334
HphI	GGTGA	2 cut(s)	353, 421
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	5 cut(s)	122, 180, 202, 210, 247
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	81, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	135, 312
Hsp92II	CATG	2 cut(s)	157, 326
Ksp22I	TGATCA	2 cut(s)	156, 175
Kzo9I	GATC	5 cut(s)	27, 113, 156, 175, 375
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	134, 302, 392, 419
Lsp1109I	GCAGC	2 cut(s)	22, 295
LweI	GCATC	3 cut(s)	90, 160, 426
MalI	GATC	5 cut(s)	29, 115, 158, 177, 377
MboI	GATC	5 cut(s)	27, 113, 156, 175, 375
MboII	GAAGA	3 cut(s)	238, 371, 404
MflI	RGATCY	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	2 cut(s)	143, 211
MluNI	TGGCCA	1 cut(s)	405
MnlI	CCTC	7 cut(s)	13, 65, 130, 216, 244, 412, 423
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	5 cut(s)	27, 113, 156, 175, 375
NlaIII	CATG	2 cut(s)	157, 326
NmeAIII	GCCGAG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 396
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	127, 242, 334
PkrI	GCNGC	2 cut(s)	12, 310
PscI	ACATGT	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	11, 309
Sau3AI	GATC	5 cut(s)	27, 113, 156, 175, 375
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	6 cut(s)	15, 49, 268, 276, 318, 411
SfaNI	GCATC	3 cut(s)	90, 160, 426
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	2 cut(s)	143, 211
SsiI	CCGC	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	192, 319
TasI	AATT	2 cut(s)	143, 211
TfiI	GAWTC	3 cut(s)	127, 242, 334
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	139, 166
TseI	GCWGC	2 cut(s)	10, 308
TspDTI	ATGAA	4 cut(s)	245, 289, 372, 384
TspGWI	ACGGA	2 cut(s)	32, 368
TspRI	CASTG	2 cut(s)	139, 166
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.