Prupe.6G017600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016367
Physical Location & Seq
Reverse (-)
1288189 .. 1289761
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G017600.1

Sequence Viewer

Length: 270 bp
ATGAAAACCAGTCAGAGAATCTTGCTTGCCTTCTTTGCCTTGATTCTCATGCACGCTGTGAGTGTGACATGTTCTTCACTGTCACTGCACCAAGAGACCCAAGTTCCAGGGAGATACAGAAATCAACCCAGAAGATTGCTAGCTTCAGTGGCCTCATTTTCTGCAAATCCGAACAAGTCCAGCAAAGCAATGGAAGATCCCAAGAAATCTGTAGAGACAAGTTTCAGAAAGGCCCCGCCCAGCAAATCAAATCCTACCCAGAACCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.9

Weight (kDa)

11.04

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 264
AflIII ACRYGT 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 264
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 89, 209
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 150, 231
AsiGI ACCGGT 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 89, 209
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 108
BmtI GCTAGC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 2 cut(s) 152, 233
BshTI ACCGGT 1 cut(s) 264
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 89, 209
BsnI GGCC 2 cut(s) 152, 233
Bso31I GGTCTC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 152, 233
BspLI GGNNCC 1 cut(s) 234
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 264
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 27, 54, 141
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 89, 209
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 35, 149
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 152, 233
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 3 cut(s) 77, 83, 153
Cac8I GCNNGC 3 cut(s) 27, 54, 141
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 264
CviAII CATG 2 cut(s) 49, 69
CviJI RGCY 3 cut(s) 143, 152, 233
CviKI_1 RGCY 3 cut(s) 143, 152, 233
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 52, 72
FaiI YATR 2 cut(s) 50, 70
FatI CATG 2 cut(s) 48, 68
FauI CCCGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 140
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 152, 233
HapII CCGG 1 cut(s) 265
Hin1II CATG 2 cut(s) 52, 72
HinfI GANTC 2 cut(s) 18, 43
HpaII CCGG 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 15, 171, 227
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 52, 88, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 149
Hsp92II CATG 2 cut(s) 52, 72
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 22, 93, 120, 142, 193, 253
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 64, 81
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 66, 144, 206
MflI RGATCY 1 cut(s) 196
MnlI CCTC 1 cut(s) 163
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 35, 149
NdeII GATC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 52, 72
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 2 cut(s) 64, 81
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PfeI GAWTC 2 cut(s) 18, 43
PinAI ACCGGT 1 cut(s) 264
PscI ACATGT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 196
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 108
SetI ASST 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 210
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 81
TfiI GAWTC 2 cut(s) 18, 43
TscAI CASTG 3 cut(s) 84, 90, 153
TseFI GTSAC 2 cut(s) 64, 81
Tsp45I GTSAC 2 cut(s) 64, 81
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 84, 90, 153
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.