Prupe.6G080300_v2.0.a1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016193
Physical Location & Seq
Reverse (-)
5466969 .. 5469651
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G080300.1

Sequence Viewer

Length: 273 bp
ATGCATCATCAGCTGAAGCTCAACATGAGAAGACAAACTCCCATTCATCTTCTCCTTGTATGGCTCCTGCTTGCAGCTTCTCAATACCACTACACTATTAATGTTCAAGCTATTGAAACAGTTCAGTTCAAGCACAATTCTGCACAGCCTGGCTCAGGGTCGGGGTCCGGAACCAGATATGTTTTACCTACTTGGGTCAGTGGAAGGAAGATCCATAAAACTCCATCAGGTCCCAACCCAGTAGGGAATCATCGCCCACCATCAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.1

Weight (kDa)

11.11

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59305 AT5G59305
fragaria_vesca FvH4_3g35710
malus_domestica MD11G1111900.v1.1
prunus_persica Prupe.6G080300_v2.0.a1 Prupe.6G080300_v2.0.a1
pyrus_communis pycom11g09250
rosa_chinensis RchiOBHm_Chr5g0063861
rosa_laevigata RLG00000035686
rosa_multiflora Rmu_sc0000552.1_g000017
rosa_roxburghii Rroxscaffold_1G00016920
rosa_samantha Rh5AG419200 Rh5CG458300 Rh5DG448300
rosa_wichuraiana Rw5G039390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 167
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 107, 116, 130
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 13, 19, 77, 110
AluI AGCT 4 cut(s) 13, 19, 77, 110
AlwI GGATC 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 165, 230
AvaII GGWCC 2 cut(s) 165, 230
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 232, 268
BciT130I CCWGG 1 cut(s) 150
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 165, 230
BmgT120I GGNCC 2 cut(s) 165, 230
BmiI GGNNCC 4 cut(s) 65, 166, 172, 232
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 167
BseBI CCWGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 1 cut(s) 167
BspLI GGNNCC 4 cut(s) 65, 166, 172, 232
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 154
BstENI CCTNNNNNAGG 1 cut(s) 153
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 165, 230
CviAII CATG 1 cut(s) 25
CviJI RGCY 7 cut(s) 13, 19, 64, 77, 110, 148, 153
CviKI_1 RGCY 7 cut(s) 13, 19, 64, 77, 110, 148, 153
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 165, 230
Eco57I CTGAAG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 26, 61, 180, 216
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 168
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 4, 74, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 167
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 8 cut(s) 80, 135, 141, 162, 181, 187, 213, 252
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 13
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 3 cut(s) 41, 42, 220
MflI RGATCY 1 cut(s) 210
MluCI AATT 1 cut(s) 136
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 4 cut(s) 65, 166, 172, 232
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 4 cut(s) 65, 166, 172, 232
PspPI GGNCC 2 cut(s) 165, 230
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 2 cut(s) 165, 230
ScrFI CCNGG 1 cut(s) 150
SetI ASST 6 cut(s) 15, 21, 79, 112, 190, 232
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 2 cut(s) 165, 230
Sse9I AATT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 121
TasI AATT 1 cut(s) 136
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 165, 230
VspI ATTAAT 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.