Rh5CG458300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016193
Physical Location & Seq
Forward (+)
63659719 .. 63660099
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG458300.1

Sequence Viewer

Length: 381 bp
ATGTTGATGTCGCCCGGGCTTTGCAAGCTTGTGGTGCAGAATTGGATTATATTAGGGATTAATGTATTTGTTGCAATTCGGAAGATAATTACTATAGCTGGGCGGGCTCTTAATAGCAGTAGTTATGGTGGCTATGGAATAGTTATGATGGCTACCTATGATGAAGATGACACAAAGATGATCTATGGTGGCATTGGTATTGAATCTGGTGCAGCGGTAAAGATGATTGAGATGCAAGCAGGTCCTGGCCTGGCATCTTGGTATAAAGCATGGGTGACTCCTTTTGGGGTGCCCATAGCAAATTGGAATGCTTTTTTAGGCTCCTGGCTTACCACTTTCACAGGCCACCGAGGCAACGATCACTCAGGCAGTGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.52

Weight (kDa)

6.7

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59305 AT5G59305
fragaria_vesca FvH4_3g35710
malus_domestica MD11G1111900.v1.1
prunus_persica Prupe.6G080300_v2.0.a1 Prupe.6G080300_v2.0.a1
pyrus_communis pycom11g09250
rosa_chinensis RchiOBHm_Chr5g0063861
rosa_laevigata RLG00000035686
rosa_multiflora Rmu_sc0000552.1_g000017
rosa_roxburghii Rroxscaffold_1G00016920
rosa_samantha Rh5AG419200 Rh5CG458300 Rh5DG448300
rosa_wichuraiana Rw5G039390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 2 cut(s) 103, 215
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 3 cut(s) 244, 249, 323
AluBI AGCT 2 cut(s) 28, 98
AluI AGCT 2 cut(s) 28, 98
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 247, 343
ApeKI GCWGC 1 cut(s) 212
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 2 cut(s) 15, 16
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 142, 368
BciT130I CCWGG 3 cut(s) 246, 251, 325
BcnI CCSGG 2 cut(s) 15, 16
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 351
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 5 cut(s) 15, 16, 246, 251, 325
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 291, 322
BmrFI CCNGG 5 cut(s) 15, 16, 246, 251, 325
BmsI GCATC 2 cut(s) 222, 263
BpuMI CCSGG 2 cut(s) 15, 16
BsaJI CCNNGG 2 cut(s) 14, 349
BseBI CCWGG 3 cut(s) 246, 251, 325
BseDI CCNNGG 2 cut(s) 14, 349
BseMII CTCAG 1 cut(s) 378
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 2 cut(s) 56, 231
BshFI GGCC 2 cut(s) 249, 345
BshNI GGYRCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 15
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 249, 345
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 109, 294
Bsp143I GATC 2 cut(s) 180, 358
BspACI CCGC 2 cut(s) 103, 215
BspANI GGCC 2 cut(s) 249, 345
BspCNI CTCAG 1 cut(s) 377
BspLI GGNNCC 2 cut(s) 291, 322
BspMI ACCTGC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 14, 349
BssMI GATC 2 cut(s) 180, 358
Bst2UI CCWGG 3 cut(s) 246, 251, 325
BstC8I GCNNGC 3 cut(s) 26, 105, 237
BstDEI CTNAG 1 cut(s) 364
BstKTI GATC 2 cut(s) 183, 361
BstMBI GATC 2 cut(s) 180, 358
BstMWI GCNNNNNNNGC 4 cut(s) 25, 34, 104, 351
BstNI CCWGG 3 cut(s) 246, 251, 325
BstSCI CCNGG 5 cut(s) 13, 14, 244, 249, 323
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 249, 345
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 26, 105, 237
CaiI CAGNNNCTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 242
Cfr9I CCCGGG 1 cut(s) 14
CviAII CATG 1 cut(s) 270
DdeI CTNAG 1 cut(s) 364
DpnI GATC 2 cut(s) 182, 360
DpnII GATC 2 cut(s) 180, 358
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 3 cut(s) 244, 249, 323
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 1 cut(s) 273
FatI CATG 1 cut(s) 269
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 249, 345
HapII CCGG 1 cut(s) 15
Hin1II CATG 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 203, 277
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 81
HpyCH4V TGCA 5 cut(s) 24, 37, 74, 212, 235
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 34, 104, 351
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 2 cut(s) 180, 358
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 222, 263
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 182, 360
MboI GATC 2 cut(s) 180, 358
MboII GAAGA 2 cut(s) 94, 176
MhlI GDGCHC 2 cut(s) 109, 294
MluCI AATT 4 cut(s) 40, 75, 87, 301
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 1 cut(s) 344
MseI TTAA 2 cut(s) 60, 111
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 5 cut(s) 15, 16, 246, 251, 325
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 3 cut(s) 246, 251, 325
MwoI GCNNNNNNNGC 4 cut(s) 25, 34, 104, 351
NciI CCSGG 2 cut(s) 15, 16
NdeII GATC 2 cut(s) 180, 358
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 2 cut(s) 291, 322
NmuCI GTSAC 1 cut(s) 274
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 3 cut(s) 244, 249, 323
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 244, 249, 323
PspN4I GGNNCC 2 cut(s) 291, 322
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 60, 111
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 180, 358
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 5 cut(s) 15, 16, 246, 251, 325
SduI GDGCHC 2 cut(s) 109, 294
SetI ASST 4 cut(s) 30, 100, 158, 244
SfaNI GCATC 2 cut(s) 222, 263
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 176
SrfI GCCCGGGC 1 cut(s) 16
Sse9I AATT 4 cut(s) 40, 75, 87, 301
SsiI CCGC 2 cut(s) 103, 215
StyD4I CCNGG 5 cut(s) 13, 14, 244, 249, 323
TasI AATT 4 cut(s) 40, 75, 87, 301
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 60, 111
Tru9I TTAA 2 cut(s) 60, 111
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 177
TspMI CCCGGG 1 cut(s) 14
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.