RLG00000035686

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016193
Physical Location & Seq
Forward (+)
70240958 .. 70245580
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035686

Sequence Viewer

Length: 861 bp
ATGTTGATCTCGCCCGGGCTTTGCAAGGTTGTGGTGCAGAACTGGATTATATTAGGGATTAATGTATTTGTTGCAATTCGGAAGATAATTACTATGGCTGGGCGGGCTCTTAATAGCGGTAGTTATGGTGGCCATGGAATAGTTATGATGGCTACCTGTGATGAAGATGACACGAAGATGATCTATGGTGGCGGTGGTGTTGAATCCGGTGCAGCGGCCAACGATCACTCAAGTAGTGATGATTGGGTCTGGATTTCCTATGCAAATGGTGTCTTCGGATTGCGCACCATGAGGGGATTTGCGGCGGCGGTCGGCGGAGAATGCTACAGGGTCAAGCTGGAAGATGGTTCTTTGGCCTCGATCTCTTTCTTGGCAAACTTGATCCCAGCTAAAAAGTGTAATGGCACACCGTTGACGAACCGAGCAATGCCGACAAGGCCTCAAAATGGGCTGGTGCTCATCAATCAAGAAGCTGGGATTTGGGTTTGGGATTGGGCCTTGCTTGGGCTTGGTTCTAAACTTGGTCAATATGGCCTTGAGCATCAGAGCACCATCCATCATCATGAAAAGGGTTCTTCTCTCAGCATGCATCACCTTCAGCTTAAGATGGGAAGACACAGCCACATTCATCTTCTTTTGATATGGCTCCTGCTCGCGACTTCTCAATACCACCACTACACTATTAATGCTCAAGCTCTTGAATCAGTTCAGTTCAAGCTCAATCCTGCACCGCGCAGTTCAAGGCCAGGCTCGGGAACCAGATATGCTTTACCTACTCGGGTAAGTGAAAGGAAGAGGATTCATAAAACTCCATCAGGACCCAACCCAGCAGGCAATCATCGCCCACCATCCAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.16

Weight (kDa)

9.67

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59305 AT5G59305
fragaria_vesca FvH4_3g35710
malus_domestica MD11G1111900.v1.1
prunus_persica Prupe.6G080300_v2.0.a1 Prupe.6G080300_v2.0.a1
pyrus_communis pycom11g09250
rosa_chinensis RchiOBHm_Chr5g0063861
rosa_laevigata RLG00000035686
rosa_multiflora Rmu_sc0000552.1_g000017
rosa_roxburghii Rroxscaffold_1G00016920
rosa_samantha Rh5AG419200 Rh5CG458300 Rh5DG448300
rosa_wichuraiana Rw5G039390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AccII CGCG 2 cut(s) 656, 733
AciI CCGC 9 cut(s) 103, 117, 192, 215, 302, 305, 308, 315, 731
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 2 cut(s) 130, 216
AcuI CTGAAG 1 cut(s) 581
AfiI CCNNNNNNNGG 3 cut(s) 446, 504, 752
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 4 cut(s) 203, 701, 715, 741
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 6 cut(s) 337, 389, 473, 601, 695, 718
AluI AGCT 6 cut(s) 337, 389, 473, 601, 695, 718
Alw21I GWGCWC 2 cut(s) 459, 551
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 3 cut(s) 14, 751, 777
AoxI GGCC 7 cut(s) 130, 216, 354, 437, 495, 532, 743
ApeKI GCWGC 1 cut(s) 212
AseI ATTAAT 2 cut(s) 60, 684
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 2 cut(s) 285, 735
AspS9I GGNCC 2 cut(s) 495, 818
AsuC2I CCSGG 2 cut(s) 15, 16
AsuHPI GGTGA 1 cut(s) 584
AvaI CYCGRG 3 cut(s) 14, 751, 777
AvaII GGWCC 1 cut(s) 818
BalI TGGCCA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 2 cut(s) 265, 619
Bbv12I GWGCWC 2 cut(s) 459, 551
BbvI GCAGC 1 cut(s) 224
BccI CCATC 7 cut(s) 142, 338, 560, 564, 601, 820, 856
BciT130I CCWGG 1 cut(s) 747
BcnI CCSGG 2 cut(s) 15, 16
BfmI CTRYAG 1 cut(s) 325
BfrI CTTAAG 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 436
BisI GCNGC 4 cut(s) 213, 216, 303, 306
BlsI GCNGC 4 cut(s) 214, 217, 304, 307
Bme1390I CCNGG 3 cut(s) 15, 16, 747
Bme18I GGWCC 1 cut(s) 818
BmeT110I CYCGRG 3 cut(s) 14, 751, 777
BmgT120I GGNCC 2 cut(s) 495, 818
BmiI GGNNCC 3 cut(s) 647, 757, 820
BmrFI CCNGG 3 cut(s) 15, 16, 747
BmsI GCATC 2 cut(s) 550, 598
BpiI GAAGAC 2 cut(s) 265, 619
BpuEI CTTGAG 3 cut(s) 214, 557, 675
BpuMI CCSGG 2 cut(s) 15, 16
BsaJI CCNNGG 2 cut(s) 14, 133
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 504, 752
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 14, 133
BseGI GGATG 2 cut(s) 552, 848
BseLI CCNNNNNNNGG 3 cut(s) 446, 504, 752
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 595
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 4 cut(s) 98, 385, 473, 826
BsgI GTGCAG 3 cut(s) 56, 231, 711
Bsh1236I CGCG 2 cut(s) 656, 733
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 7 cut(s) 132, 218, 356, 439, 497, 534, 745
BsiEI CGRYCG 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 459, 551
BsiHKCI CYCGRG 3 cut(s) 14, 751, 777
BsiSI CCGG 2 cut(s) 15, 207
BslI CCNNNNNNNGG 3 cut(s) 446, 504, 752
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 7 cut(s) 132, 218, 356, 439, 497, 534, 745
BsoBI CYCGRG 3 cut(s) 14, 751, 777
Bsp1286I GDGCHC 3 cut(s) 109, 459, 551
Bsp143I GATC 5 cut(s) 6, 180, 223, 360, 381
Bsp19I CCATGG 1 cut(s) 133
Bsp68I TCGCGA 1 cut(s) 656
BspACI CCGC 9 cut(s) 103, 117, 192, 215, 302, 305, 308, 315, 731
BspANI GGCC 7 cut(s) 132, 218, 356, 439, 497, 534, 745
BspCNI CTCAG 1 cut(s) 594
BspFNI CGCG 2 cut(s) 656, 733
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 647, 757, 820
BspPI GGATC 1 cut(s) 376
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 14, 133
BssMI GATC 5 cut(s) 6, 180, 223, 360, 381
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 788
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 105, 587, 654, 832
BstDEI CTNAG 1 cut(s) 581
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 552, 848
BstFNI CGCG 2 cut(s) 656, 733
BstHHI GCGC 2 cut(s) 285, 735
BstKTI GATC 5 cut(s) 9, 183, 226, 363, 384
BstMBI GATC 5 cut(s) 6, 180, 223, 360, 381
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 4 cut(s) 104, 321, 436, 840
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 13, 14, 745
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 2 cut(s) 656, 733
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 2 cut(s) 265, 619
BsuRI GGCC 7 cut(s) 132, 218, 356, 439, 497, 534, 745
BtgI CCRYGG 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 824
BtsCI GGATG 2 cut(s) 552, 848
BtuMI TCGCGA 1 cut(s) 656
Cac8I GCNNGC 4 cut(s) 105, 587, 654, 832
CciI TCATGA 1 cut(s) 562
CfoI GCGC 2 cut(s) 285, 735
Cfr13I GGNCC 2 cut(s) 495, 818
Cfr9I CCCGGG 1 cut(s) 14
CviAII CATG 4 cut(s) 134, 289, 563, 586
DdeI CTNAG 1 cut(s) 581
DpnI GATC 5 cut(s) 8, 182, 225, 362, 383
DpnII GATC 5 cut(s) 6, 180, 223, 360, 381
EaeI YGGCCR 2 cut(s) 130, 216
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
EciI GGCGGA 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 3 cut(s) 14, 751, 777
EcoO109I RGGNCCY 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 137, 292, 566, 589
FatI CATG 4 cut(s) 133, 288, 562, 585
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 213, 216, 303, 306
FokI GGATG 2 cut(s) 539, 835
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 213, 216, 303, 306
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 2 cut(s) 284, 734
GluI GCNGC 4 cut(s) 213, 216, 303, 306
GsaI CCCAGC 4 cut(s) 102, 389, 477, 830
HaeIII GGCC 7 cut(s) 132, 218, 356, 439, 497, 534, 745
HapII CCGG 2 cut(s) 15, 207
HhaI GCGC 2 cut(s) 285, 735
Hin1II CATG 4 cut(s) 137, 292, 566, 589
Hin6I GCGC 2 cut(s) 283, 733
HinP1I GCGC 2 cut(s) 283, 733
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 3 cut(s) 203, 701, 799
HpaII CCGG 2 cut(s) 15, 207
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 81, 278, 546
Hpy188III TCNNGA 7 cut(s) 250, 467, 563, 655, 698, 753, 816
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4V TGCA 7 cut(s) 24, 37, 74, 212, 263, 589, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 321, 436, 840
HpyF3I CTNAG 1 cut(s) 581
Hsp92II CATG 4 cut(s) 137, 292, 566, 589
HspAI GCGC 2 cut(s) 283, 733
Kzo9I GATC 5 cut(s) 6, 180, 223, 360, 381
LmnI GCTCC 1 cut(s) 651
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 550, 598
MalI GATC 5 cut(s) 8, 182, 225, 362, 383
MboI GATC 5 cut(s) 6, 180, 223, 360, 381
MboII GAAGA 9 cut(s) 94, 176, 187, 265, 353, 567, 623, 624, 805
MhlI GDGCHC 3 cut(s) 109, 459, 551
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 2 cut(s) 75, 87
MluNI TGGCCA 1 cut(s) 132
MnlI CCTC 4 cut(s) 285, 367, 450, 789
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 705
MscI TGGCCA 1 cut(s) 132
MseI TTAA 4 cut(s) 60, 111, 603, 684
MslI CAYNNNNRTG 2 cut(s) 176, 561
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 215
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 2 cut(s) 15, 207
MspR9I CCNGG 3 cut(s) 15, 16, 747
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 2 cut(s) 656, 733
MwoI GCNNNNNNNGC 4 cut(s) 104, 321, 436, 840
NciI CCSGG 2 cut(s) 15, 16
NcoI CCATGG 1 cut(s) 133
NdeII GATC 5 cut(s) 6, 180, 223, 360, 381
NlaIII CATG 4 cut(s) 137, 292, 566, 589
NlaIV GGNNCC 3 cut(s) 647, 757, 820
NruI TCGCGA 1 cut(s) 656
NsbI TGCGCA 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 591
NspI RCATGY 1 cut(s) 589
PaeI GCATGC 1 cut(s) 589
PagI TCATGA 1 cut(s) 562
PceI AGGCCT 1 cut(s) 439
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 3 cut(s) 203, 701, 799
PkrI GCNGC 4 cut(s) 214, 217, 304, 307
PpuMI RGGWCCY 1 cut(s) 818
PshBI ATTAAT 2 cut(s) 60, 684
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 4 cut(s) 98, 385, 473, 826
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 647, 757, 820
PspPI GGNCC 2 cut(s) 495, 818
PspPPI RGGWCCY 1 cut(s) 818
RruI TCGCGA 1 cut(s) 656
RseI CAYNNNNRTG 2 cut(s) 176, 561
SaqAI TTAA 4 cut(s) 60, 111, 603, 684
SatI GCNGC 4 cut(s) 213, 216, 303, 306
Sau3AI GATC 5 cut(s) 6, 180, 223, 360, 381
Sau96I GGNCC 2 cut(s) 495, 818
ScrFI CCNGG 3 cut(s) 15, 16, 747
SduI GDGCHC 3 cut(s) 109, 459, 551
SfaNI GCATC 2 cut(s) 550, 598
SfcI CTRYAG 1 cut(s) 325
SinI GGWCC 1 cut(s) 818
SmaI CCCGGG 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 176, 561
SmlI CTYRAG 4 cut(s) 229, 536, 602, 690
SmoI CTYRAG 4 cut(s) 229, 536, 602, 690
SphI GCATGC 1 cut(s) 589
SrfI GCCCGGGC 1 cut(s) 16
Sse9I AATT 2 cut(s) 75, 87
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 9 cut(s) 103, 117, 192, 215, 302, 305, 308, 315, 731
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 13, 14, 745
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 359
TasI AATT 2 cut(s) 75, 87
TauI GCSGC 3 cut(s) 218, 305, 308
TfiI GAWTC 3 cut(s) 203, 701, 799
Tru1I TTAA 4 cut(s) 60, 111, 603, 684
Tru9I TTAA 4 cut(s) 60, 111, 603, 684
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 177, 579, 617, 791
TspMI CCCGGG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 818
VspI ATTAAT 2 cut(s) 60, 684
XceI RCATGY 1 cut(s) 589
XmaI CCCGGG 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 705
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.