Prupe.6G188900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
19708844 .. 19709104
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G188900.1

Sequence Viewer

Length: 261 bp
ATGTCAGTGGAATCTTTGGCAATGGCAGGTGTAGACTATAACATGTGTTATACCAACCTTGAAGAGATGGATGGTAGAGACACGGACAATGCACCACAGTATCTTCTAGCCGAGGAAAAACCAAAGGATGAAAGTGAAATGAACGAGAAGAAAGAGTTGATGGTAGAAAAACAACCACAGGTAAAGGAAAATTTGAAAGCATGGGCTACAGTTCCCCACTTTCATGCCGTGGTTATACAAGATTGCCGGGAAGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.88

Weight (kDa)

4.53

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 62, 196
Alw26I GTCTC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BccI CCATC 3 cut(s) 61, 65, 154
BceAI ACGGC 1 cut(s) 212
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 111, 228
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 111, 228
BseGI GGATG 2 cut(s) 76, 133
BseMI GCAATG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 111, 228
Bst4CI ACNGT 2 cut(s) 99, 211
Bst6I CTCTTC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 76, 133
BstMAI GTCTC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 76, 133
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 17
CviAII CATG 3 cut(s) 43, 201, 224
CviJI RGCY 3 cut(s) 110, 206, 254
CviKI_1 RGCY 3 cut(s) 110, 206, 254
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
FaeI CATG 3 cut(s) 46, 204, 227
FaiI YATR 6 cut(s) 39, 44, 51, 202, 225, 236
FatI CATG 3 cut(s) 42, 200, 223
FblI GTMKAC 1 cut(s) 33
FokI GGATG 2 cut(s) 83, 140
FspBI CTAG 1 cut(s) 107
HapII CCGG 1 cut(s) 247
Hin1II CATG 3 cut(s) 46, 204, 227
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 99, 211
HpyCH4V TGCA 1 cut(s) 92
Hsp92II CATG 3 cut(s) 46, 204, 227
LpnPI CCDG 2 cut(s) 12, 164
MaeI CTAG 1 cut(s) 107
MboII GAAGA 3 cut(s) 74, 95, 160
MluCI AATT 1 cut(s) 190
MnlI CCTC 1 cut(s) 106
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 248
NciI CCSGG 1 cut(s) 248
NlaIII CATG 3 cut(s) 46, 204, 227
NmeAIII GCCGAG 1 cut(s) 136
NspI RCATGY 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 17
PciI ACATGT 1 cut(s) 42
PfeI GAWTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 248
SetI ASST 3 cut(s) 31, 60, 183
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 99, 211
TasI AATT 1 cut(s) 190
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 144, 155, 212
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.