RLG00000022954

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
15796229 .. 15796654
426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022954

Sequence Viewer

Length: 327 bp
ATGTCGGTTGAAGCTTTAGCAATGGCAGGCGTAGACTATGATAAGTGCCACATCAACCTTGAAGAGAAGGAAGGAAGAGACATAGATCATACACCCCAGTATCTTCTGGCTAAGCAAAATTCCAATGATGGAAGTGAAAGGAATGGGAAGAACATGTTGGCGGTAGAAATTCAGCAAGAGAAGACAAATGTTGAAGCTTGGCCTGAGTTCCCCAATGGCATGCCACCTGAAATTTGTGTCGTTAAACAACATTGCAGGGAAATGCTATCCGAGGGCCCAAGTGCATGTTATGCTTCTACTTTTGCCATCTCAAGCCATAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

4.97

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 118, 168, 231
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 3 cut(s) 11, 62, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 14, 197
AluI AGCT 2 cut(s) 14, 197
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 2 cut(s) 200, 274
ApaI GGGCCC 1 cut(s) 278
ApoI RAATTY 3 cut(s) 118, 168, 231
AspS9I GGNCC 2 cut(s) 274, 275
BaeGI GKGCMC 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BanII GRGCYC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 188
BccI CCATC 2 cut(s) 122, 314
BcoDI GTCTC 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 274, 275
BmiI GGNNCC 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 2 cut(s) 27, 250
BseDI CCNNGG 1 cut(s) 270
BseMI GCAATG 2 cut(s) 27, 250
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 278
BshFI GGCC 2 cut(s) 202, 276
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 202, 276
Bsp120I GGGCCC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 85
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 202, 276
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 27, 250
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 57, 70
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 28, 221
BstDEI CTNAG 2 cut(s) 111, 204
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 3 cut(s) 157, 223, 288
BstSLI GKGCMC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 202, 276
Cac8I GCNNGC 2 cut(s) 28, 221
Cfr13I GGNCC 2 cut(s) 274, 275
CviAII CATG 3 cut(s) 154, 220, 285
CviJI RGCY 6 cut(s) 14, 110, 197, 202, 276, 315
CviKI_1 RGCY 6 cut(s) 14, 110, 197, 202, 276, 315
DdeI CTNAG 2 cut(s) 111, 204
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 57, 70
EarI CTCTTC 2 cut(s) 57, 70
Eco24I GRGCYC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 3 cut(s) 157, 223, 288
FaiI YATR 8 cut(s) 39, 83, 90, 155, 221, 286, 291, 318
FatI CATG 3 cut(s) 153, 219, 284
FblI GTMKAC 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 278
HaeIII GGCC 2 cut(s) 202, 276
Hin1II CATG 3 cut(s) 157, 223, 288
HindIII AAGCTT 2 cut(s) 12, 195
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 61, 65
HpyCH4V TGCA 2 cut(s) 255, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 111, 204
Hsp92II CATG 3 cut(s) 157, 223, 288
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 12, 92, 110, 216, 240, 241
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 5 cut(s) 74, 87, 95, 160, 193
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 3 cut(s) 118, 168, 231
MnlI CCTC 1 cut(s) 265
MseI TTAA 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 85
NlaIII CATG 3 cut(s) 157, 223, 288
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 3 cut(s) 157, 223, 288
PaeI GCATGC 1 cut(s) 223
PciI ACATGT 1 cut(s) 153
PscI ACATGT 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 276
PspOMI GGGCCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 274, 275
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 274, 275
SduI GDGCHC 1 cut(s) 278
SetI ASST 4 cut(s) 16, 60, 199, 229
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SphI GCATGC 1 cut(s) 223
Sse9I AATT 3 cut(s) 118, 168, 231
SsiI CCGC 1 cut(s) 161
TasI AATT 3 cut(s) 118, 168, 231
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
XapI RAATTY 3 cut(s) 118, 168, 231
XceI RCATGY 3 cut(s) 157, 223, 288
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.