Rorug02G0184700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018913
Physical Location & Seq
Reverse (-)
17187187 .. 17188346
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0184700.1

Sequence Viewer

Length: 1080 bp
ATGGCTAAGATTGTTCATTCACTCTTCTTTCTTTCGCTCTTATTCACTTCTTCACTATCAACCCTAACCGCACAACCCTGCTCAACCCACCAGTCCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTAGTTGGCGGTTCAAAATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGTTCACAAGCCTTGGTTGCTTTTCAAAGAAGCGATGGAACCATGGCTTTTTATTCATCACCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACGAAGAAATCACTATCTTTGCCACCCTAGGGCTCCCAAACAATGTTACAACTGTGAATCAATTATGGCAACAAGGACCTCTTCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGAAGCAACCCGTACACATCACTCTTCTGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATGGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCGGTCACCGGACTTATGCTGGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGTTCTGGAATTTGTTCCACTATGCCCTTGGTTACACTGCAATTGTCCTTGGCATAGTAAACATATTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTCGCTGCATTGGTGTTTCTCGGTGTAGTAGGGGCAGCGTTCATCCACTGGAACAACAAGAGGACTCAAGCTGCGAAGACACAACTGGAACAAAGGGCGGATGAAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

39.44

Weight (kDa)

9.33

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 88 - 186 5.8e-28 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018913)

Species Orthologous Gene IDs
prunus_persica Prupe.1G517800_v2.0.a1 Prupe.6G188900_v2.0.a1
rosa_laevigata RLG00000018038 RLG00000022954
rosa_rugosa Rorug02G0184700
rosa_samantha Rh2AG239100 Rh2BG252800 Rh2CG243300 Rh2DG247200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 2 cut(s) 645, 739
AccI GTMKAC 3 cut(s) 186, 381, 652
AccII CGCG 1 cut(s) 395
AciI CCGC 9 cut(s) 69, 216, 230, 393, 395, 814, 841, 932, 1064
AclWI GGATC 1 cut(s) 834
AcsI RAATTY 2 cut(s) 685, 850
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 6 cut(s) 176, 435, 491, 645, 739, 960
AgsI TTSAA 4 cut(s) 222, 293, 691, 910
AjnI CCWGG 2 cut(s) 502, 789
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 4 cut(s) 339, 671, 800, 1037
AluI AGCT 4 cut(s) 339, 671, 800, 1037
AlwI GGATC 1 cut(s) 834
AoxI GGCC 2 cut(s) 523, 815
ApeKI GCWGC 4 cut(s) 116, 971, 1001, 1037
ApoI RAATTY 2 cut(s) 685, 850
Asp700I GAANNNNTTC 2 cut(s) 164, 854
AspA2I CCTAGG 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 482, 524, 701, 787
AsuHPI GGTGA 2 cut(s) 318, 763
AsuNHI GCTAGC 1 cut(s) 796
AvaII GGWCC 3 cut(s) 482, 701, 787
AvrII CCTAGG 1 cut(s) 433
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 1049
BbvI GCAGC 4 cut(s) 128, 958, 1013, 1024
BccI CCATC 2 cut(s) 178, 296
BciT130I CCWGG 2 cut(s) 504, 791
BciVI GTATCC 1 cut(s) 613
BfaI CTAG 4 cut(s) 209, 249, 434, 797
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 6 cut(s) 117, 231, 815, 972, 1002, 1038
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 6 cut(s) 118, 232, 816, 973, 1003, 1039
Bme1390I CCNGG 2 cut(s) 504, 791
Bme18I GGWCC 3 cut(s) 482, 701, 787
BmgT120I GGNCC 4 cut(s) 482, 524, 701, 787
BmiI GGNNCC 6 cut(s) 307, 365, 440, 547, 806, 930
BmrFI CCNGG 2 cut(s) 504, 791
BmtI GCTAGC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 1049
BpuEI CTTGAG 1 cut(s) 1017
BsaJI CCNNGG 9 cut(s) 255, 279, 309, 393, 433, 549, 622, 868, 889
BsaWI WCCGGW 2 cut(s) 773, 823
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 435, 491, 645, 739, 960
Bse1I ACTGG 5 cut(s) 91, 134, 161, 1019, 1056
BseBI CCWGG 2 cut(s) 504, 791
BseDI CCNNGG 9 cut(s) 255, 279, 309, 393, 433, 549, 622, 868, 889
BseGI GGATG 2 cut(s) 1008, 1072
BseLI CCNNNNNNNGG 6 cut(s) 176, 435, 491, 645, 739, 960
BseNI ACTGG 5 cut(s) 91, 134, 161, 1019, 1056
BseXI GCAGC 4 cut(s) 128, 958, 1013, 1024
BseYI CCCAGC 1 cut(s) 800
Bsh1236I CGCG 1 cut(s) 395
BshFI GGCC 2 cut(s) 525, 817
BshNI GGYRCC 1 cut(s) 545
BsiSI CCGG 2 cut(s) 774, 824
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 6 cut(s) 176, 435, 491, 645, 739, 960
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 2 cut(s) 525, 817
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 127, 826
Bsp19I CCATGG 2 cut(s) 309, 622
BspACI CCGC 9 cut(s) 69, 216, 230, 393, 395, 814, 841, 932, 1064
BspANI GGCC 2 cut(s) 525, 817
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 6 cut(s) 307, 365, 440, 547, 806, 930
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 545
BsrI ACTGG 5 cut(s) 91, 134, 161, 1019, 1056
BssECI CCNNGG 9 cut(s) 255, 279, 309, 393, 433, 549, 622, 868, 889
BssMI GATC 2 cut(s) 127, 826
BssNAI GTATAC 1 cut(s) 653
BssT1I CCWWGG 8 cut(s) 255, 279, 309, 433, 549, 622, 868, 889
Bst1107I GTATAC 1 cut(s) 653
Bst2UI CCWGG 2 cut(s) 504, 791
Bst4CI ACNGT 3 cut(s) 184, 460, 1075
Bst6I CTCTTC 3 cut(s) 29, 492, 601
BstC8I GCNNGC 2 cut(s) 763, 798
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 3 cut(s) 309, 393, 622
BstEII GGTNACC 1 cut(s) 769
BstF5I GGATG 2 cut(s) 1008, 1072
BstFNI CGCG 1 cut(s) 395
BstKTI GATC 2 cut(s) 130, 829
BstMBI GATC 2 cut(s) 127, 826
BstMWI GCNNNNNNNGC 3 cut(s) 236, 284, 677
BstNI CCWGG 2 cut(s) 504, 791
BstNSI RCATGY 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 769
BstSCI CCNGG 2 cut(s) 502, 789
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 4 cut(s) 128, 958, 1013, 1024
BstV2I GAAGAC 1 cut(s) 1049
BstXI CCANNNNNNTGG 2 cut(s) 262, 942
BstZ17I GTATAC 1 cut(s) 653
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 525, 817
BtgI CCRYGG 3 cut(s) 309, 393, 622
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 1008, 1072
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 876, 1012
Cac8I GCNNGC 2 cut(s) 763, 798
Cfr13I GGNCC 4 cut(s) 482, 524, 701, 787
Cfr42I CCGCGG 1 cut(s) 396
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 1 cut(s) 585
CviAII CATG 8 cut(s) 120, 310, 491, 610, 623, 658, 708, 958
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 129, 828
DpnII GATC 2 cut(s) 127, 826
Eam1104I CTCTTC 3 cut(s) 29, 492, 601
EarI CTCTTC 3 cut(s) 29, 492, 601
EciI GGCGGA 1 cut(s) 1079
Eco130I CCWWGG 8 cut(s) 255, 279, 309, 433, 549, 622, 868, 889
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 3 cut(s) 482, 701, 787
Eco91I GGTNACC 1 cut(s) 769
EcoO109I RGGNCCY 2 cut(s) 482, 524
EcoO65I GGTNACC 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 502, 789
EcoT14I CCWWGG 8 cut(s) 255, 279, 309, 433, 549, 622, 868, 889
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 8 cut(s) 255, 279, 309, 433, 549, 622, 868, 889
FaeI CATG 8 cut(s) 123, 313, 494, 613, 626, 661, 711, 961
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 79
FatI CATG 8 cut(s) 119, 309, 490, 609, 622, 657, 707, 957
FblI GTMKAC 3 cut(s) 186, 381, 652
Fnu4HI GCNGC 6 cut(s) 117, 231, 815, 972, 1002, 1038
FokI GGATG 1 cut(s) 995
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 6 cut(s) 117, 231, 815, 972, 1002, 1038
FspBI CTAG 4 cut(s) 209, 249, 434, 797
GluI GCNGC 6 cut(s) 117, 231, 815, 972, 1002, 1038
GsaI CCCAGC 1 cut(s) 804
HaeIII GGCC 2 cut(s) 525, 817
HapII CCGG 2 cut(s) 774, 824
Hin1II CATG 8 cut(s) 123, 313, 494, 613, 626, 661, 711, 961
HinfI GANTC 3 cut(s) 463, 964, 1030
HpaII CCGG 2 cut(s) 774, 824
HphI GGTGA 2 cut(s) 318, 763
Hpy166II GTNNAC 8 cut(s) 187, 272, 382, 400, 587, 653, 721, 901
Hpy188I TCNGA 2 cut(s) 200, 684
Hpy188III TCNNGA 1 cut(s) 847
Hpy8I GTNNAC 8 cut(s) 187, 272, 382, 400, 587, 653, 721, 901
HpyCH4III ACNGT 3 cut(s) 184, 460, 1075
HpyCH4IV ACGT 2 cut(s) 717, 723
HpyCH4V TGCA 5 cut(s) 116, 194, 511, 881, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 284, 677
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 717, 723
Hsp92II CATG 8 cut(s) 123, 313, 494, 613, 626, 661, 711, 961
KspI CCGCGG 1 cut(s) 396
Kzo9I GATC 2 cut(s) 127, 826
LmnI GCTCC 3 cut(s) 355, 444, 668
Lsp1109I GCAGC 4 cut(s) 128, 958, 1013, 1024
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 4 cut(s) 209, 249, 434, 797
MaeII ACGT 2 cut(s) 717, 723
MaeIII GTNAC 4 cut(s) 451, 494, 769, 872
MalI GATC 2 cut(s) 129, 828
MboI GATC 2 cut(s) 127, 826
MboII GAAGA 6 cut(s) 16, 42, 422, 479, 588, 1054
MfeI CAATTG 1 cut(s) 882
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 6 cut(s) 160, 467, 685, 756, 850, 882
MlyI GAGTC 1 cut(s) 1024
MnlI CCTC 4 cut(s) 377, 495, 939, 1020
MroXI GAANNNNTTC 2 cut(s) 164, 854
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 774, 824
MspR9I CCNGG 2 cut(s) 504, 791
MunI CAATTG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 2 cut(s) 504, 791
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 236, 284, 677
NcoI CCATGG 2 cut(s) 309, 622
NdeII GATC 2 cut(s) 127, 826
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 8 cut(s) 123, 313, 494, 613, 626, 661, 711, 961
NlaIV GGNNCC 6 cut(s) 307, 365, 440, 547, 806, 930
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 1 cut(s) 123
PctI GAATGC 1 cut(s) 194
PdmI GAANNNNTTC 2 cut(s) 164, 854
PfeI GAWTC 2 cut(s) 463, 964
PflMI CCANNNNNTGG 2 cut(s) 645, 739
PkrI GCNGC 6 cut(s) 118, 232, 816, 973, 1003, 1039
PleI GAGTC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 1024
PpuMI RGGWCCY 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 502, 789
PspEI GGTNACC 1 cut(s) 769
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 2 cut(s) 502, 789
PspN4I GGNNCC 6 cut(s) 307, 365, 440, 547, 806, 930
PspPI GGNCC 4 cut(s) 482, 524, 701, 787
PspPPI RGGWCCY 1 cut(s) 482
PsrI GAACNNNNNNTAC 4 cut(s) 253, 285, 827, 859
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
RseI CAYNNNNRTG 1 cut(s) 662
SacII CCGCGG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 6 cut(s) 117, 231, 815, 972, 1002, 1038
Sau3AI GATC 2 cut(s) 127, 826
Sau96I GGNCC 4 cut(s) 482, 524, 701, 787
SchI GAGTC 1 cut(s) 1024
ScrFI CCNGG 2 cut(s) 504, 791
SduI GDGCHC 1 cut(s) 441
SexAI ACCWGGT 1 cut(s) 502
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SinI GGWCC 3 cut(s) 482, 701, 787
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 1032
SmoI CTYRAG 1 cut(s) 1032
Sse9I AATT 6 cut(s) 160, 467, 685, 756, 850, 882
SsiI CCGC 9 cut(s) 69, 216, 230, 393, 395, 814, 841, 932, 1064
SspMI CTAG 4 cut(s) 209, 249, 434, 797
StyD4I CCNGG 2 cut(s) 502, 789
StyI CCWWGG 8 cut(s) 255, 279, 309, 433, 549, 622, 868, 889
TaaI ACNGT 3 cut(s) 184, 460, 1075
TaiI ACGT 2 cut(s) 720, 726
TaqI TCGA 2 cut(s) 515, 573
TaqII GACCGA 1 cut(s) 757
TasI AATT 6 cut(s) 160, 467, 685, 756, 850, 882
TauI GCSGC 2 cut(s) 233, 817
TfiI GAWTC 2 cut(s) 463, 964
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 2 cut(s) 883, 1019
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 4 cut(s) 116, 971, 1001, 1037
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 6 cut(s) 5, 312, 479, 626, 647, 997
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 883, 1019
Van91I CCANNNNNTGG 2 cut(s) 645, 739
VpaK11BI GGWCC 3 cut(s) 482, 701, 787
XapI RAATTY 2 cut(s) 685, 850
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 3 cut(s) 262, 797, 866
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 3 cut(s) 186, 381, 652
XmnI GAANNNNTTC 2 cut(s) 164, 854
XspI CTAG 4 cut(s) 209, 249, 434, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.