Prupe.6G192300_v2.0.a1

lanC-like protein GCL1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014537
Physical Location & Seq
Reverse (-)
19961260 .. 19966060
4801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G192300.1

Sequence Viewer

Length: 1278 bp
ATGTCGTTTGGGGTGGAGTTAACGTCGTCTCCGGAGGGTCATGAGGATGCCAACAACGAACGGCTGGATTTGATTGATCCAACGGCTCCCAACTGGTCACTTCCCAGCGAGACTTTTCTCAGAGCAGCTGTGTCTCTCAAGGACCAGGTGGTACAGGCCACGTGGGAAGGAGGAGGGGATTCGGGTTCGGGTCTGCGGACGGGTATGGTATTGGATCCGACAGTGTATACGGGTTTGCTTGGTACGGCTTTTACGTGTTTGAGGTCTTACGAGGCAACTGGTAACCGGCAGGACTTGGTGCTGTCCACAGAGGTTGTCGACAAGTGCGTGACCATCGAACGTGCGTCCACAAGGCACGTGACGTTTTTATGTGGTAGAGGAGGAGTTTACGCCATTGGAGCTGTAGTGGCCAACTTGATTGGCGACCATCAAAGGCGTGACTTGTATTTGAACCTTTTCCTTGAGGTAGCACAAGAGAAGGCCCTCTCAGTTGGGCCAGAGGAAGGTGGTTTTGGAATGTCATATGATCTTCTACATGGGAGAGCTGGTTTTTTATGGGCAGCTTTGTTCATAAACAAGTATCTTGGACAAGAGAAGGTGCCAAGTGATCTTCTAATGCCTGTGGTGGATGCTGTGTTGGCTGGAGGTAGGGCAGGTGCATCTGATAACCCTTCCTGCCCACTCATGTACAGGTGGCATGGGACAAGGTATTTAGGGGCAGCCAATGGCCTGGCTGGAATTTTGCAAGTCCTGCTTCACTTCCCACTTGCTAAAGAGGATGCAGAGGATGTGAAGGCAACTCTCAGATATATGATGGCTAATAGGTTTCCTCATAGTGGAAACTACCCTTCAAGTGAAGGGAACCCCAGAGACAAGTTTGTGCATTGGTCTCATGGTGCAGCTGGCATGGCCATAACCCTGTGCAAGGCATCACAGGTGTTTCCAGGTGACAGGGAATTTCGCCATGCTGCGATAGAAGCAGGAGAAGTTGTGTGGAAGAATGGCTTGCTGAAGAAGGTAGGACTTGCTGATGGTGTGGCTGGGAATGCCTATGCCTTCCTTTCTCTCTACCGTCTAACCGGAGAAGCCATATATGAAGGGAGAGCAAAGGCATTCGCAAGCTTCTTGTATCACAACGGTAGAGAACTTGTGACAGTGGGGGACACTCATGGGGCTGAACATGCCTATTCCCTTTTTCAAGGACTTGCCGGAACAGCTTGCCTCTTGTTTGATCTGCACGTGCCCGAAAACGCCAGGTTCCCAGGTTATGAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019898 GO:0023052 GO:0044425 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LANC_like

Protein Analysis

426

Amino Acids

45.95

Weight (kDa)

5.7

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65280 AT5G65280
fragaria_vesca FvH4_1g20300
malus_domestica MD01G1035100.v1.1 MD15G1320800.v1.1
prunus_persica Prupe.6G192300_v2.0.a1
pyrus_communis pycom15g28180
rosa_chinensis RchiOBHm_Chr2g0112441
rosa_laevigata RLG00000017981
rosa_multiflora Rmu_sc0012231.1_g000002
rosa_roxburghii Rroxscaffold_2G00131440
rosa_rugosa Rorug02G0180600
rosa_samantha Rh2AG234000 Rh2BG247300 Rh2CG238500 Rh2DG241600
rosa_wichuraiana Rw2G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 598
AccI GTMKAC 2 cut(s) 227, 318
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 1 cut(s) 196
AclWI GGATC 3 cut(s) 71, 209, 222
AcoI YGGCCR 2 cut(s) 408, 909
AcsI RAATTY 2 cut(s) 738, 956
AcuI CTGAAG 1 cut(s) 1031
AcvI CACGTG 3 cut(s) 162, 358, 1240
AfaI GTAC 3 cut(s) 153, 244, 689
AfiI CCNNNNNNNGG 3 cut(s) 503, 836, 925
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 451, 852, 1199
AjnI CCWGG 5 cut(s) 144, 729, 943, 1253, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 7 cut(s) 128, 401, 545, 563, 902, 1122, 1217
AluI AGCT 7 cut(s) 128, 401, 545, 563, 902, 1122, 1217
Alw26I GTCTC 5 cut(s) 33, 104, 138, 864, 894
AlwI GGATC 3 cut(s) 71, 209, 222
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 6 cut(s) 156, 408, 480, 494, 727, 909
ApeKI GCWGC 5 cut(s) 125, 560, 719, 899, 968
ApoI RAATTY 2 cut(s) 738, 956
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 142, 481, 494
AsuHPI GGTGA 1 cut(s) 959
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 1245
BalI TGGCCA 2 cut(s) 410, 911
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 598
BbrPI CACGTG 3 cut(s) 162, 358, 1240
BbvI GCAGC 5 cut(s) 137, 572, 731, 911, 955
BccI CCATC 4 cut(s) 341, 435, 808, 1025
BceAI ACGGC 3 cut(s) 77, 99, 261
BciT130I CCWGG 5 cut(s) 146, 731, 945, 1255, 1263
BcoDI GTCTC 5 cut(s) 33, 104, 138, 864, 894
BfmI CTRYAG 2 cut(s) 402, 1274
BfuAI ACCTGC 1 cut(s) 644
BisI GCNGC 5 cut(s) 126, 561, 720, 900, 969
BlsI GCNGC 5 cut(s) 127, 562, 721, 901, 970
Bme1390I CCNGG 5 cut(s) 146, 731, 945, 1255, 1263
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 142, 481, 494
BmiI GGNNCC 5 cut(s) 87, 216, 600, 863, 1259
BmrFI CCNGG 5 cut(s) 146, 731, 945, 1255, 1263
BmsI GCATC 5 cut(s) 37, 619, 668, 769, 938
BpmI CTGGAG 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 122, 482
BsaAI YACGTR 4 cut(s) 162, 255, 358, 1240
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 1261
BsaWI WCCGGW 2 cut(s) 31, 1079
Bsc4I CCNNNNNNNGG 3 cut(s) 503, 836, 925
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 98, 283
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 5 cut(s) 146, 731, 945, 1255, 1263
BseDI CCNNGG 1 cut(s) 1261
BseGI GGATG 4 cut(s) 52, 634, 784, 793
BseLI CCNNNNNNNGG 3 cut(s) 503, 836, 925
BseMII CTCAG 3 cut(s) 133, 501, 817
BseNI ACTGG 2 cut(s) 98, 283
BseRI GAGGAG 3 cut(s) 186, 393, 396
BseSI GKGCMC 1 cut(s) 1245
BseXI GCAGC 5 cut(s) 137, 572, 731, 911, 955
BseYI CCCAGC 2 cut(s) 104, 1040
BsgI GTGCAG 2 cut(s) 918, 1220
BshFI GGCC 6 cut(s) 158, 410, 482, 496, 729, 911
BshNI GGYRCC 1 cut(s) 598
BsiSI CCGG 4 cut(s) 32, 286, 1080, 1209
BslFI GGGAC 2 cut(s) 715, 1175
BslI CCNNNNNNNGG 3 cut(s) 503, 836, 925
BsmAI GTCTC 5 cut(s) 33, 104, 138, 864, 894
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 715, 1175
BsmI GAATGC 2 cut(s) 1051, 1112
BsnI GGCC 6 cut(s) 158, 410, 482, 496, 729, 911
Bso31I GGTCTC 1 cut(s) 894
Bsp1286I GDGCHC 1 cut(s) 1245
Bsp13I TCCGGA 1 cut(s) 31
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 5 cut(s) 76, 214, 526, 607, 1231
BspACI CCGC 1 cut(s) 196
BspANI GGCC 6 cut(s) 158, 410, 482, 496, 729, 911
BspCNI CTCAG 3 cut(s) 132, 500, 816
BspEI TCCGGA 1 cut(s) 31
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 5 cut(s) 87, 216, 600, 863, 1259
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 3 cut(s) 71, 209, 222
BspT107I GGYRCC 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 894
BsrFI RCCGGY 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 2 cut(s) 98, 283
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 1261
BssMI GATC 5 cut(s) 76, 214, 526, 607, 1231
BssNAI GTATAC 1 cut(s) 228
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 5 cut(s) 146, 731, 945, 1255, 1263
Bst4CI ACNGT 5 cut(s) 223, 1073, 1139, 1156, 1275
BstAPI GCANNNNNTGC 1 cut(s) 751
BstAUI TGTACA 1 cut(s) 687
BstBAI YACGTR 4 cut(s) 162, 255, 358, 1240
BstC8I GCNNGC 4 cut(s) 904, 1007, 1120, 1219
BstDEI CTNAG 3 cut(s) 119, 487, 803
BstEII GGTNACC 1 cut(s) 281
BstENI CCTNNNNNAGG 1 cut(s) 923
BstF5I GGATG 4 cut(s) 52, 634, 784, 793
BstKTI GATC 5 cut(s) 79, 217, 529, 610, 1234
BstMAI GTCTC 5 cut(s) 33, 104, 138, 864, 894
BstMBI GATC 5 cut(s) 76, 214, 526, 607, 1231
BstMWI GCNNNNNNNGC 9 cut(s) 398, 407, 638, 751, 908, 977, 1046, 1181, 1214
BstNI CCWGG 5 cut(s) 146, 731, 945, 1255, 1263
BstNSI RCATGY 1 cut(s) 1184
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 5 cut(s) 144, 729, 943, 1253, 1261
BstSFI CTRYAG 2 cut(s) 402, 1274
BstSLI GKGCMC 1 cut(s) 1245
BstV1I GCAGC 5 cut(s) 137, 572, 731, 911, 955
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 228
BsuRI GGCC 6 cut(s) 158, 410, 482, 496, 729, 911
BtsCI GGATG 4 cut(s) 52, 634, 784, 793
BtsIMutI CAGTG 2 cut(s) 228, 1161
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 4 cut(s) 904, 1007, 1120, 1219
CciI TCATGA 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 142, 481, 494
CseI GACGC 1 cut(s) 333
CsiI ACCWGGT 1 cut(s) 144
Csp6I GTAC 3 cut(s) 152, 243, 688
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 9 cut(s) 41, 536, 685, 698, 893, 907, 965, 1169, 1181
CviQI GTAC 3 cut(s) 152, 243, 688
DdeI CTNAG 3 cut(s) 119, 487, 803
DpnI GATC 5 cut(s) 78, 216, 528, 609, 1233
DpnII GATC 5 cut(s) 76, 214, 526, 607, 1231
EaeI YGGCCR 2 cut(s) 408, 909
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 1031
Eco72I CACGTG 3 cut(s) 162, 358, 1240
Eco91I GGTNACC 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 481
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 5 cut(s) 144, 729, 943, 1253, 1261
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 9 cut(s) 44, 539, 688, 701, 896, 910, 968, 1172, 1184
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 989, 1021
FaqI GGGAC 2 cut(s) 715, 1175
FatI CATG 9 cut(s) 40, 535, 684, 697, 892, 906, 964, 1168, 1180
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 2 cut(s) 227, 318
Fnu4HI GCNGC 5 cut(s) 126, 561, 720, 900, 969
FokI GGATG 4 cut(s) 59, 641, 791, 800
Fsp4HI GCNGC 5 cut(s) 126, 561, 720, 900, 969
GluI GCNGC 5 cut(s) 126, 561, 720, 900, 969
GsaI CCCAGC 2 cut(s) 108, 1044
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 6 cut(s) 158, 410, 482, 496, 729, 911
HapII CCGG 4 cut(s) 32, 286, 1080, 1209
HgaI GACGC 1 cut(s) 333
Hin1II CATG 9 cut(s) 44, 539, 688, 701, 896, 910, 968, 1172, 1184
HincII GTYRAC 2 cut(s) 21, 319
HindII GTYRAC 2 cut(s) 21, 319
HindIII AAGCTT 1 cut(s) 1120
HinfI GANTC 1 cut(s) 179
HpaI GTTAAC 1 cut(s) 21
HpaII CCGG 4 cut(s) 32, 286, 1080, 1209
HphI GGTGA 1 cut(s) 959
Hpy166II GTNNAC 6 cut(s) 21, 228, 306, 319, 348, 388
Hpy188I TCNGA 4 cut(s) 122, 219, 664, 806
Hpy188III TCNNGA 2 cut(s) 32, 41
Hpy8I GTNNAC 6 cut(s) 21, 228, 306, 319, 348, 388
Hpy99I CGWCG 1 cut(s) 28
HpyCH4III ACNGT 5 cut(s) 223, 1073, 1139, 1156, 1275
HpyCH4IV ACGT 7 cut(s) 23, 161, 254, 340, 357, 362, 1239
HpyCH4V TGCA 7 cut(s) 659, 745, 782, 883, 899, 924, 1237
HpyF10VI GCNNNNNNNGC 9 cut(s) 398, 407, 638, 751, 908, 977, 1046, 1181, 1214
HpyF3I CTNAG 3 cut(s) 119, 487, 803
HpySE526I ACGT 7 cut(s) 23, 161, 254, 340, 357, 362, 1239
Hsp92II CATG 9 cut(s) 44, 539, 688, 701, 896, 910, 968, 1172, 1184
Kpn2I TCCGGA 1 cut(s) 31
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 5 cut(s) 76, 214, 526, 607, 1231
LmnI GCTCC 2 cut(s) 91, 398
Lsp1109I GCAGC 5 cut(s) 137, 572, 731, 911, 955
LweI GCATC 5 cut(s) 37, 619, 668, 769, 938
MabI ACCWGGT 1 cut(s) 144
MaeII ACGT 7 cut(s) 23, 161, 254, 340, 357, 362, 1239
MaeIII GTNAC 7 cut(s) 96, 281, 328, 358, 437, 947, 1150
MalI GATC 5 cut(s) 78, 216, 528, 609, 1233
MboI GATC 5 cut(s) 76, 214, 526, 607, 1231
MboII GAAGA 4 cut(s) 521, 602, 1009, 1024
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 1245
MlsI TGGCCA 2 cut(s) 410, 911
MluCI AATT 2 cut(s) 738, 956
MluNI TGGCCA 2 cut(s) 410, 911
MmeI TCCRAC 2 cut(s) 104, 242
Mox20I TGGCCA 2 cut(s) 410, 911
MroI TCCGGA 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 2 cut(s) 410, 911
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 2 cut(s) 410, 911
MspA1I CMGCKG 2 cut(s) 128, 902
MspI CCGG 4 cut(s) 32, 286, 1080, 1209
MspR9I CCNGG 5 cut(s) 146, 731, 945, 1255, 1263
Mva1269I GAATGC 2 cut(s) 1051, 1112
MvaI CCWGG 5 cut(s) 146, 731, 945, 1255, 1263
MwoI GCNNNNNNNGC 9 cut(s) 398, 407, 638, 751, 908, 977, 1046, 1181, 1214
NdeI CATATG 1 cut(s) 523
NdeII GATC 5 cut(s) 76, 214, 526, 607, 1231
NlaIII CATG 9 cut(s) 44, 539, 688, 701, 896, 910, 968, 1172, 1184
NlaIV GGNNCC 5 cut(s) 87, 216, 600, 863, 1259
NmuCI GTSAC 6 cut(s) 96, 328, 358, 437, 947, 1150
NspI RCATGY 1 cut(s) 1184
PagI TCATGA 1 cut(s) 40
PaqCI CACCTGC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 324
PctI GAATGC 2 cut(s) 1051, 1112
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 5 cut(s) 127, 562, 721, 901, 970
PmaCI CACGTG 3 cut(s) 162, 358, 1240
PmlI CACGTG 3 cut(s) 162, 358, 1240
Ppu21I YACGTR 4 cut(s) 162, 255, 358, 1240
Psp6I CCWGG 5 cut(s) 144, 729, 943, 1253, 1261
PspCI CACGTG 3 cut(s) 162, 358, 1240
PspEI GGTNACC 1 cut(s) 281
PspFI CCCAGC 2 cut(s) 104, 1040
PspGI CCWGG 5 cut(s) 144, 729, 943, 1253, 1261
PspN4I GGNNCC 5 cut(s) 87, 216, 600, 863, 1259
PspPI GGNCC 3 cut(s) 142, 481, 494
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 2 cut(s) 128, 902
RsaI GTAC 3 cut(s) 153, 244, 689
RsaNI GTAC 3 cut(s) 152, 243, 688
RseI CAYNNNNRTG 1 cut(s) 45
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 5 cut(s) 126, 561, 720, 900, 969
Sau3AI GATC 5 cut(s) 76, 214, 526, 607, 1231
Sau96I GGNCC 3 cut(s) 142, 481, 494
ScrFI CCNGG 5 cut(s) 146, 731, 945, 1255, 1263
SduI GDGCHC 1 cut(s) 1245
SexAI ACCWGGT 1 cut(s) 144
SfaNI GCATC 5 cut(s) 37, 619, 668, 769, 938
SfcI CTRYAG 2 cut(s) 402, 1274
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 137, 461
SmoI CTYRAG 2 cut(s) 137, 461
Sse9I AATT 2 cut(s) 738, 956
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 5 cut(s) 144, 729, 943, 1253, 1261
TaaI ACNGT 5 cut(s) 223, 1073, 1139, 1156, 1275
TaiI ACGT 7 cut(s) 26, 164, 257, 343, 360, 365, 1242
TaqI TCGA 2 cut(s) 318, 336
TasI AATT 2 cut(s) 738, 956
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 228, 1161
TseFI GTSAC 6 cut(s) 96, 328, 358, 437, 947, 1150
TseI GCWGC 5 cut(s) 125, 560, 719, 899, 968
Tsp45I GTSAC 6 cut(s) 96, 328, 358, 437, 947, 1150
TspDTI ATGAA 2 cut(s) 559, 1110
TspRI CASTG 2 cut(s) 228, 1161
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 923
XapI RAATTY 2 cut(s) 738, 956
XceI RCATGY 1 cut(s) 1184
XmiI GTMKAC 2 cut(s) 227, 318
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.