Rh2BG247300

lanC-like protein GCL1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014537
Physical Location & Seq
Forward (+)
25212048 .. 25216966
4919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG247300.1

Sequence Viewer

Length: 993 bp
ATGTCGTCCGTGGTGGGATACTTAGCTTCGTCATCGTCGTCGTCCCCGGAAGGCCATGATGAAGGCAACAACGAACGGCTCGATTTCGTCTGTCCCACGAATTCCGACTTGTCACTAAATCCCGGCGAGACATTTATCCGAGCAGCCGTGTCCCTCAAGGACCAGGTAGTGAAGGCCACGTGGGAAGGAGAGCGGAGCTCCGGGATGGGGTTGGATCCGACTGTGTATACGGGTCTGCTCGGCACGGCGTTCACGTGCCTGAGGTCGTACGAGGCCACCGGAAACCGACAGGACTTGCTACTGTGCGCCGAGATCGCCGACAACTGCGCGGCCGTCGCACGTGTCTCCGCCAGGCACGTGACATTTTTGTGTGGTAGAGGAGGAGTTTACGCTCTTGGAGCTGTTGTGGCTAATTTGGTTGGGGACCATCAAAGACTTGACTTGTATTTGAACCTCTTCCTTGAGGTAGCACAAGAGAAGGCCCTATCTGTTGGGCCCGAGGAAGGTGGTTTTGGAATGTCATATGATCTTCTTTATGGGAGAGCTGGGTTTCTATGGGCAGCTTTGTTCATAAACAAGTACCTTGGACAAGAGAATGTGCCCAGTGAACTTCTGATGCCCATCGTCAATGCTGTGTTGGCTGGAGGAAGGGCAGGAGCATCTGATAACCCTTCATGCCCACTTATGTACAGATGGCATGGAACAAGGTACTTGGGCGCAGCAAATGGTCTGGCTGGAATTTTGCAAGTGCTACTTCACTTCCCTCTTTCAGAAGAGGATGCAGAAGATGTGAAAGGAACTCTTAGGTATATGATGGCTAATCGGTTTCCTCACAGTGGAAATTACCCCTCAAGCGAAGGAAACCCAAGAGATAAGTTTGTCCAGTGGTCTCATGGTGCAGCCGGCATGGCCATCACCTTGTGCAAGGCATCACAGGTTAGTAACTCCAGCAGAATTAACTTTTCTGATGAAATTGTCAGCTTGGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019898 GO:0023052 GO:0044425 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LANC_like

Protein Analysis

330

Amino Acids

35.35

Weight (kDa)

5.19

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 71 - 325 2.4e-58 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65280 AT5G65280
fragaria_vesca FvH4_1g20300
malus_domestica MD01G1035100.v1.1 MD15G1320800.v1.1
prunus_persica Prupe.6G192300_v2.0.a1
pyrus_communis pycom15g28180
rosa_chinensis RchiOBHm_Chr2g0112441
rosa_laevigata RLG00000017981
rosa_multiflora Rmu_sc0012231.1_g000002
rosa_roxburghii Rroxscaffold_2G00131440
rosa_rugosa Rorug02G0180600
rosa_samantha Rh2AG234000 Rh2BG247300 Rh2CG238500 Rh2DG241600
rosa_wichuraiana Rw2G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 227
AccII CGCG 1 cut(s) 329
AciI CCGC 3 cut(s) 193, 329, 348
AclWI GGATC 2 cut(s) 209, 222
AcoI YGGCCR 2 cut(s) 330, 909
AcsI RAATTY 2 cut(s) 100, 738
AcvI CACGTG 4 cut(s) 180, 255, 341, 358
AdeI CACNNNGTG 1 cut(s) 921
AfaI GTAC 4 cut(s) 269, 581, 689, 710
AfiI CCNNNNNNNGG 3 cut(s) 207, 503, 836
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 2 cut(s) 162, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 26, 198, 401, 545, 563, 981
AluI AGCT 6 cut(s) 26, 198, 401, 545, 563, 981
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 122, 349, 894
AlwI GGATC 2 cut(s) 209, 222
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 7 cut(s) 52, 174, 273, 330, 480, 494, 909
ApaI GGGCCC 1 cut(s) 498
ApeKI GCWGC 4 cut(s) 143, 560, 719, 899
ApoI RAATTY 2 cut(s) 100, 738
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 3 cut(s) 308, 329, 719
AspS9I GGNCC 5 cut(s) 160, 424, 481, 494, 495
AsuC2I CCSGG 3 cut(s) 47, 123, 202
AsuHPI GGTGA 1 cut(s) 907
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 2 cut(s) 160, 424
AxyI CCTNAGG 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 498, 603
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 200, 498
BbrPI CACGTG 4 cut(s) 180, 255, 341, 358
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 4 cut(s) 155, 572, 731, 911
BccI CCATC 6 cut(s) 199, 435, 629, 687, 808, 920
BceAI ACGGC 4 cut(s) 92, 131, 261, 317
BciT130I CCWGG 2 cut(s) 164, 352
BciVI GTATCC 1 cut(s) 11
BcnI CCSGG 3 cut(s) 47, 123, 202
BcoDI GTCTC 3 cut(s) 122, 349, 894
BfaI CTAG 1 cut(s) 987
BfuI GTATCC 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 908
BisI GCNGC 5 cut(s) 144, 330, 561, 720, 900
BlsI GCNGC 5 cut(s) 145, 331, 562, 721, 901
Bme1390I CCNGG 5 cut(s) 47, 123, 164, 202, 352
Bme18I GGWCC 2 cut(s) 160, 424
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 5 cut(s) 160, 424, 481, 494, 495
BmiI GGNNCC 3 cut(s) 216, 425, 496
BmrFI CCNGG 5 cut(s) 47, 123, 164, 202, 352
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 606, 668, 769, 938
BmuI ACTGGG 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 2 cut(s) 663, 931
BpuEI CTTGAG 3 cut(s) 140, 482, 835
BpuMI CCSGG 3 cut(s) 47, 123, 202
BsaAI YACGTR 4 cut(s) 180, 255, 341, 358
BsaBI GATNNNNATC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 4 cut(s) 9, 45, 498, 583
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 503, 836
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 2 cut(s) 603, 883
Bse21I CCTNAGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 2 cut(s) 164, 352
BseDI CCNNGG 4 cut(s) 9, 45, 498, 583
BseGI GGATG 2 cut(s) 210, 784
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 3 cut(s) 207, 503, 836
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 603, 883
BseRI GAGGAG 2 cut(s) 393, 396
BseSI GKGCMC 2 cut(s) 498, 603
BseX3I CGGCCG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 155, 572, 731, 911
BseYI CCCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 7 cut(s) 54, 176, 275, 332, 482, 496, 911
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 5 cut(s) 47, 123, 201, 279, 903
BsiWI CGTACG 1 cut(s) 267
BslFI GGGAC 4 cut(s) 28, 78, 136, 437
BslI CCNNNNNNNGG 3 cut(s) 207, 503, 836
BsmAI GTCTC 3 cut(s) 122, 349, 894
BsmFI GGGAC 4 cut(s) 28, 78, 136, 437
BsnI GGCC 7 cut(s) 54, 176, 275, 332, 482, 496, 911
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 497
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 200, 498, 603
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 3 cut(s) 214, 312, 526
BspACI CCGC 3 cut(s) 193, 329, 348
BspANI GGCC 7 cut(s) 54, 176, 275, 332, 482, 496, 911
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 216, 425, 496
BspPI GGATC 2 cut(s) 209, 222
BspTNI GGTCTC 1 cut(s) 894
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 2 cut(s) 603, 883
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 4 cut(s) 9, 45, 498, 583
BssMI GATC 3 cut(s) 214, 312, 526
BssNAI GTATAC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 583
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 164, 352
Bst4CI ACNGT 3 cut(s) 223, 303, 836
Bst6I CTCTTC 2 cut(s) 461, 768
BstAUI TGTACA 1 cut(s) 687
BstBAI YACGTR 4 cut(s) 180, 255, 341, 358
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 3 cut(s) 22, 260, 803
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 210, 784
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 3 cut(s) 308, 329, 719
BstKTI GATC 3 cut(s) 217, 315, 529
BstMAI GTCTC 3 cut(s) 122, 349, 894
BstMBI GATC 3 cut(s) 214, 312, 526
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 6 cut(s) 314, 335, 398, 407, 638, 908
BstNI CCWGG 2 cut(s) 164, 352
BstSCI CCNGG 5 cut(s) 45, 121, 162, 200, 350
BstSLI GKGCMC 2 cut(s) 498, 603
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 155, 572, 731, 911
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 330
Bsu36I CCTNAGG 1 cut(s) 260
BsuI GTATCC 1 cut(s) 11
BsuRI GGCC 7 cut(s) 54, 176, 275, 332, 482, 496, 911
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 210, 784
BtsIMutI CAGTG 3 cut(s) 610, 841, 890
Cac8I GCNNGC 1 cut(s) 904
CfoI GCGC 3 cut(s) 308, 329, 719
Cfr10I RCCGGY 1 cut(s) 902
Cfr13I GGNCC 5 cut(s) 160, 424, 481, 494, 495
CsiI ACCWGGT 1 cut(s) 162
Csp6I GTAC 4 cut(s) 268, 580, 688, 709
CviAII CATG 5 cut(s) 56, 675, 698, 893, 907
CviQI GTAC 4 cut(s) 268, 580, 688, 709
DdeI CTNAG 3 cut(s) 22, 260, 803
DpnI GATC 3 cut(s) 216, 314, 528
DpnII GATC 3 cut(s) 214, 312, 526
DraIII CACNNNGTG 1 cut(s) 921
EaeI YGGCCR 2 cut(s) 330, 909
EagI CGGCCG 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 461, 768
EarI CTCTTC 2 cut(s) 461, 768
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 2 cut(s) 200, 498
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 160, 424
Eco52I CGGCCG 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 198
Eco72I CACGTG 4 cut(s) 180, 255, 341, 358
Eco81I CCTNAGG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 162, 350
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 2 cut(s) 200, 498
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 5 cut(s) 59, 678, 701, 896, 910
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 786, 818
FaqI GGGAC 4 cut(s) 28, 78, 136, 437
FatI CATG 5 cut(s) 55, 674, 697, 892, 906
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 144, 330, 561, 720, 900
FokI GGATG 2 cut(s) 217, 791
FriOI GRGCYC 2 cut(s) 200, 498
Fsp4HI GCNGC 5 cut(s) 144, 330, 561, 720, 900
FspBI CTAG 1 cut(s) 987
GlaI GCGC 3 cut(s) 307, 328, 718
GluI GCNGC 5 cut(s) 144, 330, 561, 720, 900
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 2 cut(s) 663, 931
HaeIII GGCC 7 cut(s) 54, 176, 275, 332, 482, 496, 911
HapII CCGG 5 cut(s) 47, 123, 201, 279, 903
HhaI GCGC 3 cut(s) 308, 329, 719
Hin1II CATG 5 cut(s) 59, 678, 701, 896, 910
Hin6I GCGC 3 cut(s) 306, 327, 717
HinP1I GCGC 3 cut(s) 306, 327, 717
HpaII CCGG 5 cut(s) 47, 123, 201, 279, 903
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 4 cut(s) 228, 252, 388, 608
Hpy188I TCNGA 7 cut(s) 106, 140, 219, 615, 664, 772, 967
Hpy8I GTNNAC 4 cut(s) 228, 252, 388, 608
Hpy99I CGWCG 3 cut(s) 40, 43, 338
HpyAV CCTTC 9 cut(s) 44, 56, 166, 179, 472, 497, 642, 681, 851
HpyCH4III ACNGT 3 cut(s) 223, 303, 836
HpyCH4IV ACGT 4 cut(s) 179, 254, 340, 357
HpyCH4V TGCA 4 cut(s) 745, 782, 899, 924
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 335, 398, 407, 638, 908
HpyF3I CTNAG 3 cut(s) 22, 260, 803
HpySE526I ACGT 4 cut(s) 179, 254, 340, 357
Hsp92II CATG 5 cut(s) 59, 678, 701, 896, 910
HspAI GCGC 3 cut(s) 306, 327, 717
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Kzo9I GATC 3 cut(s) 214, 312, 526
LmnI GCTCC 4 cut(s) 195, 203, 398, 656
Lsp1109I GCAGC 4 cut(s) 155, 572, 731, 911
LweI GCATC 4 cut(s) 606, 668, 769, 938
MabI ACCWGGT 1 cut(s) 162
MaeI CTAG 1 cut(s) 987
MaeII ACGT 4 cut(s) 179, 254, 340, 357
MaeIII GTNAC 3 cut(s) 111, 358, 941
MalI GATC 3 cut(s) 216, 314, 528
MbiI CCGCTC 1 cut(s) 193
MboI GATC 3 cut(s) 214, 312, 526
MboII GAAGA 4 cut(s) 448, 521, 785, 797
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 200, 498, 603
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 6 cut(s) 100, 412, 738, 841, 954, 972
MluNI TGGCCA 1 cut(s) 911
MmeI TCCRAC 3 cut(s) 129, 192, 242
Mox20I TGGCCA 1 cut(s) 911
MroNI GCCGGC 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 911
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 911
MspI CCGG 5 cut(s) 47, 123, 201, 279, 903
MspR9I CCNGG 5 cut(s) 47, 123, 164, 202, 352
MvaI CCWGG 2 cut(s) 164, 352
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 6 cut(s) 314, 335, 398, 407, 638, 908
NaeI GCCGGC 1 cut(s) 904
NciI CCSGG 3 cut(s) 47, 123, 202
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 214, 312, 526
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 5 cut(s) 59, 678, 701, 896, 910
NlaIV GGNNCC 3 cut(s) 216, 425, 496
NmeAIII GCCGAG 2 cut(s) 219, 334
NmuCI GTSAC 2 cut(s) 111, 358
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 78, 251
PdiI GCCGGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 455
Pfl23II CGTACG 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 5 cut(s) 145, 331, 562, 721, 901
PmaCI CACGTG 4 cut(s) 180, 255, 341, 358
PmlI CACGTG 4 cut(s) 180, 255, 341, 358
Ppu21I YACGTR 4 cut(s) 180, 255, 341, 358
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 162, 350
PspCI CACGTG 4 cut(s) 180, 255, 341, 358
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 2 cut(s) 162, 350
PspLI CGTACG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 216, 425, 496
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 5 cut(s) 160, 424, 481, 494, 495
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 4 cut(s) 269, 581, 689, 710
RsaNI GTAC 4 cut(s) 268, 580, 688, 709
RseI CAYNNNNRTG 1 cut(s) 367
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 957
SatI GCNGC 5 cut(s) 144, 330, 561, 720, 900
Sau3AI GATC 3 cut(s) 214, 312, 526
Sau96I GGNCC 5 cut(s) 160, 424, 481, 494, 495
ScrFI CCNGG 5 cut(s) 47, 123, 164, 202, 352
SduI GDGCHC 3 cut(s) 200, 498, 603
SexAI ACCWGGT 1 cut(s) 162
SfaNI GCATC 4 cut(s) 606, 668, 769, 938
SinI GGWCC 2 cut(s) 160, 424
SmiMI CAYNNNNRTG 1 cut(s) 367
SmlI CTYRAG 3 cut(s) 155, 461, 850
SmoI CTYRAG 3 cut(s) 155, 461, 850
Sse9I AATT 6 cut(s) 100, 412, 738, 841, 954, 972
SsiI CCGC 3 cut(s) 193, 329, 348
SspMI CTAG 1 cut(s) 987
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 5 cut(s) 45, 121, 162, 200, 350
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 223, 303, 836
TaiI ACGT 4 cut(s) 182, 257, 343, 360
TaqI TCGA 1 cut(s) 81
TasI AATT 6 cut(s) 100, 412, 738, 841, 954, 972
TatI WGTACW 1 cut(s) 687
TauI GCSGC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 3 cut(s) 610, 841, 890
TseFI GTSAC 2 cut(s) 111, 358
TseI GCWGC 4 cut(s) 143, 560, 719, 899
Tsp45I GTSAC 2 cut(s) 111, 358
TspDTI ATGAA 4 cut(s) 75, 559, 663, 984
TspRI CASTG 3 cut(s) 610, 841, 890
VpaK11BI GGWCC 2 cut(s) 160, 424
XapI RAATTY 2 cut(s) 100, 738
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.