Prupe.6G193200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017226
Physical Location & Seq
Reverse (-)
20046498 .. 20047838
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G193200.1

Sequence Viewer

Length: 600 bp
ATGGGTTGGTCTGAATCAGGGAGAGGATGCAATAAGCACCAGCTGTTTGGAGGCGACGACATGATGATGAAGCAATATTCATCGCCAGGTGTTTGTTCATCTTGTCTTAGTGAGAGGCTCTCTGAGCTCTATGCCCCCTCCTCAACTTTCTTCAGTGAGAGACTTGCTCGTACTGTTTCTTCTCCCCGTAATCAATCTAATTCCTCGTCTTCTTCTGTTTCCTCCTCCGCCGGCTCTCCTCCTGTTAATAATTATTATTATTCTACAAGCTTCAGCGGCCGAGGCCCTCAGCGTCGTCATCGGCGTCATGCTTCGGAAATATTGGGTTCGTTTTCTTTCATGACAAGGAGTAGCACGAGTACTGGTGGTGGGTATGGCCGCGGCGGCCATGATGATTATGATGATGGGGTGATGAAGAAGAGCAGATCGGTCGCCGCGGTTGTTTCGAAGACAAATCATCATCGTTTCGGAGATCAGAAGGCTAGTAGTGGTGGTGGGAAGCAGAAGAAGAAAAAAAGAGGGTTTTGGTCGAAGCTGCTTCGGACAACGGGGAGCAAAACCAAGGAGGTTTTGAAGCACTCAAAGAGTAGTCTAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

200

Amino Acids

21.6

Weight (kDa)

10.26

Isoelectric Point (pI)

67.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017226)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20240
prunus_persica Prupe.6G193200_v2.0.a1
pyrus_communis pycom15g28120
rosa_chinensis RchiOBHm_Chr2g0112381
rosa_laevigata RLG00000017972
rosa_multiflora Rmu_sc0004467.1_g000054
rosa_roxburghii Rroxscaffold_2G00131490
rosa_rugosa Rorug02G0180000
rosa_samantha Rh2AG233200 Rh2BG246700 Rh2CG237600 Rh2DG240800
rosa_wichuraiana Rw2G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 381, 437
AciI CCGC 7 cut(s) 228, 276, 379, 381, 384, 435, 437
AcoI YGGCCR 3 cut(s) 277, 376, 385
AcuI CTGAAG 2 cut(s) 136, 256
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 2 cut(s) 172, 361
AgsI TTSAA 1 cut(s) 574
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 4 cut(s) 43, 127, 270, 535
AluI AGCT 4 cut(s) 43, 127, 270, 535
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 4 cut(s) 277, 283, 376, 385
ApeKI GCWGC 1 cut(s) 535
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BauI CACGAG 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 201, 455
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 522
BccI CCATC 1 cut(s) 398
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 483, 593
BglI GCCNNNNNGGC 1 cut(s) 384
BisI GCNGC 6 cut(s) 277, 379, 382, 385, 435, 536
BlsI GCNGC 6 cut(s) 278, 380, 383, 386, 436, 537
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 201, 455
BplI GAGNNNNNCTC 4 cut(s) 104, 136, 151, 183
Bpu10I CCTNAGC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 4 cut(s) 280, 379, 435, 561
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 280, 379, 435, 561
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 114, 302
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 3 cut(s) 130, 214, 228
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 522
Bsh1236I CGCG 2 cut(s) 381, 437
Bsh1285I CGRYCG 2 cut(s) 280, 432
BshFI GGCC 4 cut(s) 279, 285, 378, 387
BsiEI CGRYCG 2 cut(s) 280, 432
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 4 cut(s) 279, 285, 378, 387
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 425, 472
BspACI CCGC 7 cut(s) 228, 276, 379, 381, 384, 435, 437
BspANI GGCC 4 cut(s) 279, 285, 378, 387
BspCNI CTCAG 2 cut(s) 115, 301
BspFNI CGCG 2 cut(s) 381, 437
BspHI TCATGA 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 280, 379, 435, 561
BssMI GATC 2 cut(s) 425, 472
BssNI GRCGYC 1 cut(s) 304
BssSI CACGAG 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 107, 123, 288
BstDSI CCRYGG 2 cut(s) 379, 435
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 381, 437
BstKTI GATC 2 cut(s) 428, 475
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 425, 472
BstMCI CGRYCG 2 cut(s) 280, 432
BstMWI GCNNNNNNNGC 4 cut(s) 124, 276, 282, 384
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstUI CGCG 2 cut(s) 381, 437
BstV1I GCAGC 1 cut(s) 522
BstV2I GAAGAC 2 cut(s) 201, 455
BstXI CCANNNNNNTGG 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 4 cut(s) 279, 285, 378, 387
BtgI CCRYGG 2 cut(s) 379, 435
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 284
Cfr42I CCGCGG 2 cut(s) 382, 438
CseI GACGC 2 cut(s) 281, 293
Csp6I GTAC 2 cut(s) 171, 360
CviAII CATG 4 cut(s) 61, 308, 340, 389
CviQI GTAC 2 cut(s) 171, 360
DdeI CTNAG 3 cut(s) 107, 123, 288
DpnI GATC 2 cut(s) 427, 474
DpnII GATC 2 cut(s) 425, 472
EaeI YGGCCR 3 cut(s) 277, 376, 385
EagI CGGCCG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 136, 256
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 4 cut(s) 64, 311, 343, 392
FaiI YATR 7 cut(s) 62, 132, 309, 341, 375, 390, 399
FatI CATG 4 cut(s) 60, 307, 339, 388
Fnu4HI GCNGC 6 cut(s) 277, 379, 382, 385, 435, 536
FokI GGATG 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 6 cut(s) 277, 379, 382, 385, 435, 536
FspBI CTAG 2 cut(s) 483, 593
GluI GCNGC 6 cut(s) 277, 379, 382, 385, 435, 536
HaeIII GGCC 4 cut(s) 279, 285, 378, 387
HapII CCGG 1 cut(s) 231
HgaI GACGC 2 cut(s) 281, 293
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 4 cut(s) 64, 311, 343, 392
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 6 cut(s) 13, 124, 316, 470, 477, 543
Hpy188III TCNNGA 1 cut(s) 340
Hpy99I CGWCG 2 cut(s) 59, 297
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 276, 282, 384
HpyF3I CTNAG 3 cut(s) 107, 123, 288
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 4 cut(s) 64, 311, 343, 392
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
KspI CCGCGG 2 cut(s) 382, 438
Kzo9I GATC 2 cut(s) 425, 472
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 552
LpnPI CCDG 7 cut(s) 3, 53, 72, 99, 244, 255, 348
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 1 cut(s) 17
MaeI CTAG 2 cut(s) 483, 593
MalI GATC 2 cut(s) 427, 474
MboI GATC 2 cut(s) 425, 472
MboII GAAGA 9 cut(s) 142, 171, 201, 204, 427, 430, 460, 517, 520
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 199, 250
MroNI GCCGGC 1 cut(s) 230
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 4 cut(s) 43, 276, 381, 437
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 2 cut(s) 381, 437
MwoI GCNNNNNNNGC 4 cut(s) 124, 276, 282, 384
NaeI GCCGGC 1 cut(s) 232
NdeII GATC 2 cut(s) 425, 472
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 4 cut(s) 64, 311, 343, 392
NmeAIII GCCGAG 1 cut(s) 305
NspV TTCGAA 1 cut(s) 446
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 6 cut(s) 278, 380, 383, 386, 436, 537
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 2 cut(s) 172, 361
RsaNI GTAC 2 cut(s) 171, 360
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 129
SacII CCGCGG 2 cut(s) 382, 438
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 6 cut(s) 277, 379, 382, 385, 435, 536
Sau3AI GATC 2 cut(s) 425, 472
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 45, 91, 129, 272, 537, 570
SfaNI GCATC 1 cut(s) 17
SfiI GGCCNNNNNGGCC 1 cut(s) 384
Sfr303I CCGCGG 2 cut(s) 382, 438
SfuI TTCGAA 1 cut(s) 446
SgrBI CCGCGG 2 cut(s) 382, 438
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 199, 250
SsiI CCGC 7 cut(s) 228, 276, 379, 381, 384, 435, 437
SspI AATATT 2 cut(s) 77, 321
SspMI CTAG 2 cut(s) 483, 593
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 446, 530
TaqII GACCGA 1 cut(s) 418
TasI AATT 2 cut(s) 199, 250
TatI WGTACW 1 cut(s) 359
TauI GCSGC 5 cut(s) 279, 381, 384, 387, 437
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 5 cut(s) 69, 83, 87, 328, 428
TspRI CASTG 1 cut(s) 160
XspI CTAG 2 cut(s) 483, 593
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.