pycom15g28120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017226
Physical Location & Seq
Forward (+)
23847638 .. 23848195
558 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28120.1

Sequence Viewer

Length: 558 bp
ATGGGTTGGTCAGAATCACAGAGAGGATGCATGAGGCACCACCAGTTCCAGTACTACGCCACCGATAATAAGCAAACCCTAATATCACCAGGCGTCTGTTCAGCTTGTCTGAGTGAGAAACTCTCTCAGCTCTACGCTCCCTCCTCAACTCATCGCACCGACAGACTCCAAGTTAGTTATCCTTCTGCACATGATCAATCCGATTCCTCTTCTGTTTCCTCCTCCACTTGCAACTCTCCGCCGCCGGTGGCGGGCAGCGGCCGAGATCATCGTCGACGTAATGGTTCCCATATGAATGTTTTGGGTTCGGTTTCTTTTATGATAAGGAGCAGTACCACTACTTGTGCTCCTACAACTGGTGCTGGTGGTCATGGGCTGATGAAGAAGAGCAGGTCGGTTACCGTCGCTTCGAAGAGCAGTCATCATAGTTTCGGAGATGGTCACAAGAACAGTAGTGGGAAGAAGAAGAAAAGAGGGTTTTGGTCGAAGCTGCTACGGAAAATGGGGAATAGATCAACCAAGGAGGTTCTCAAGCACCCAGAGACTGATCTTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

186

Amino Acids

20.22

Weight (kDa)

10.2

Isoelectric Point (pI)

68.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017226)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20240
prunus_persica Prupe.6G193200_v2.0.a1
pyrus_communis pycom15g28120
rosa_chinensis RchiOBHm_Chr2g0112381
rosa_laevigata RLG00000017972
rosa_multiflora Rmu_sc0004467.1_g000054
rosa_roxburghii Rroxscaffold_2G00131490
rosa_rugosa Rorug02G0180000
rosa_samantha Rh2AG233200 Rh2BG246700 Rh2CG237600 Rh2DG240800
rosa_wichuraiana Rw2G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 274
AciI CCGC 4 cut(s) 239, 242, 251, 258
AcoI YGGCCR 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 53, 334
AfiI CCNNNNNNNGG 2 cut(s) 251, 356
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 104, 130, 490
AluI AGCT 3 cut(s) 104, 130, 490
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 255, 490
AsuHPI GGTGA 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 267, 477
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 381
BisI GCNGC 4 cut(s) 242, 256, 259, 491
BlsI GCNGC 4 cut(s) 243, 257, 260, 492
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 38, 286
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 519
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 356
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 3 cut(s) 43, 49, 361
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 251, 356
BseMII CTCAG 2 cut(s) 101, 140
BseNI ACTGG 3 cut(s) 43, 49, 361
BseRI GAGGAG 2 cut(s) 133, 211
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 267, 477
BsgI GTGCAG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 251, 356
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 193, 265, 512, 547
BspACI CCGC 4 cut(s) 239, 242, 251, 258
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 102, 139
BspLI GGNNCC 2 cut(s) 38, 286
BspMI ACCTGC 1 cut(s) 381
BspQI GCTCTTC 2 cut(s) 380, 407
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 3 cut(s) 43, 49, 361
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 4 cut(s) 193, 265, 512, 547
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 403, 452
Bst6I CTCTTC 3 cut(s) 214, 380, 407
BstACI GRCGYC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 110, 126, 551
BstEII GGTNACC 1 cut(s) 397
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 4 cut(s) 196, 268, 515, 550
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 4 cut(s) 193, 265, 512, 547
BstMCI CGRYCG 1 cut(s) 262
BstNI CCWGG 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 267, 477
BstZI CGGCCG 1 cut(s) 259
BsuRI GGCC 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 244
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 52, 333
CviAII CATG 3 cut(s) 31, 191, 371
CviJI RGCY 5 cut(s) 104, 130, 261, 376, 490
CviKI_1 RGCY 5 cut(s) 104, 130, 261, 376, 490
CviQI GTAC 2 cut(s) 52, 333
DdeI CTNAG 3 cut(s) 110, 126, 551
DpnI GATC 4 cut(s) 195, 267, 514, 549
DpnII GATC 4 cut(s) 193, 265, 512, 547
EaeI YGGCCR 1 cut(s) 259
EagI CGGCCG 1 cut(s) 259
Eam1104I CTCTTC 3 cut(s) 214, 380, 407
EarI CTCTTC 3 cut(s) 214, 380, 407
EciI GGCGGA 1 cut(s) 228
EclXI CGGCCG 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 519
Eco52I CGGCCG 1 cut(s) 259
Eco91I GGTNACC 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 3 cut(s) 34, 194, 374
FaiI YATR 7 cut(s) 32, 192, 291, 293, 320, 372, 426
FatI CATG 3 cut(s) 30, 190, 370
FauI CCCGC 1 cut(s) 244
FauNDI CATATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 242, 256, 259, 491
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 4 cut(s) 242, 256, 259, 491
GluI GCNGC 4 cut(s) 242, 256, 259, 491
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 34, 194, 374
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 3 cut(s) 14, 165, 203
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 4 cut(s) 13, 111, 202, 434
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 3 cut(s) 276, 279, 407
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 403, 452
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 30, 188, 231
HpyF3I CTNAG 3 cut(s) 110, 126, 551
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 34, 194, 374
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 4 cut(s) 193, 265, 512, 547
LguI GCTCTTC 2 cut(s) 380, 407
LmnI GCTCC 3 cut(s) 142, 327, 352
LpnPI CCDG 9 cut(s) 56, 62, 75, 102, 258, 342, 348, 376, 552
Lsp1109I GCAGC 2 cut(s) 267, 477
LweI GCATC 1 cut(s) 17
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 397, 440
MalI GATC 4 cut(s) 195, 267, 514, 549
MboI GATC 4 cut(s) 193, 265, 512, 547
MboII GAAGA 7 cut(s) 201, 394, 397, 424, 472, 475, 478
MhlI GDGCHC 1 cut(s) 349
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 9 cut(s) 17, 27, 151, 154, 217, 229, 232, 467, 517
Mph1103I ATGCAT 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 291
NdeII GATC 4 cut(s) 193, 265, 512, 547
NlaIII CATG 3 cut(s) 34, 194, 374
NlaIV GGNNCC 2 cut(s) 38, 286
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 32
NspV TTCGAA 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 380, 407
PfeI GAWTC 2 cut(s) 14, 203
PkrI GCNGC 4 cut(s) 243, 257, 260, 492
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 38, 286
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 53, 334
RsaNI GTAC 2 cut(s) 52, 333
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 273
SapI GCTCTTC 2 cut(s) 380, 407
SatI GCNGC 4 cut(s) 242, 256, 259, 491
Sau3AI GATC 4 cut(s) 193, 265, 512, 547
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 349
SetI ASST 6 cut(s) 106, 132, 280, 395, 492, 528
SfaNI GCATC 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 244
SgrDI CGTCGACG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SsiI CCGC 4 cut(s) 239, 242, 251, 258
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 403, 452
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 274, 410, 485
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 244, 261
TfiI GAWTC 2 cut(s) 14, 203
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 255, 490
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 308, 395
TspGWI ACGGA 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.