Rroxscaffold_2G00131490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017226
Physical Location & Seq
Reverse (-)
68124321 .. 68124851
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131490.1

Sequence Viewer

Length: 531 bp
ATGGGCTGGTCAGAATCAGAGAGAGGACTCTGCAAGAAGCACCCGGAAGTGAAGCAGTTCCCCGGCGCCGTCTGCTCGACATGTCTCAGTGAAAAGCTCTCTCAGCTCTACGCTCCCTCCTCCATTTCCGACAGAAAACTAACCGCAGATTTCTTGGGTTACGGCTTCCTCCCAATCCACTCTTGCTCTTCTTCTAACTACTCCTCCGCTTCCCCTTCGCCCCGCGCCTCTCCTCCGGTGATCAATCCAGGCCGTCGAGGGTACCACCAACGCAACGCGTCGGAGGTGATGGGCCGTTCGATATCTTTCATGTTCAGCAGTGATGGGACAAAGCAGGGTGGAGGGCATGGGTTGATGAAGAAGAGCAGATCGGTTGCGGTGGTGACGAGGAGTGCTGGAAGTCATAGCTTTGGAGATCAGGTGGTGATGAGGAGTGGGAAGAAGAAACGAGGGTTTTGGTCGAAGCTGATTAGGGGGACGGGGAGGAAGACCAAGCAGGTTTTTAAGCACTCCAAGAGTGCTCTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

176

Amino Acids

19.16

Weight (kDa)

10.55

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017226)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20240
prunus_persica Prupe.6G193200_v2.0.a1
pyrus_communis pycom15g28120
rosa_chinensis RchiOBHm_Chr2g0112381
rosa_laevigata RLG00000017972
rosa_multiflora Rmu_sc0004467.1_g000054
rosa_roxburghii Rroxscaffold_2G00131490
rosa_rugosa Rorug02G0180000
rosa_samantha Rh2AG233200 Rh2BG246700 Rh2CG237600 Rh2DG240800
rosa_wichuraiana Rw2G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 487
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 65, 261
AccII CGCG 2 cut(s) 225, 278
AciI CCGC 4 cut(s) 144, 207, 223, 377
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 263
AflIII ACRYGT 2 cut(s) 80, 276
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 97, 106, 408, 466
AluI AGCT 4 cut(s) 97, 106, 408, 466
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 2 cut(s) 250, 292
Asp700I GAANNNNTTC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 68, 227
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 2 cut(s) 44, 63
AsuHPI GGTGA 4 cut(s) 250, 298, 394, 436
BanI GGYRCC 2 cut(s) 65, 261
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 2 cut(s) 283, 317
BceAI ACGGC 4 cut(s) 53, 178, 237, 279
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 2 cut(s) 44, 63
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 487
Bme1390I CCNGG 3 cut(s) 44, 63, 249
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 67, 263
BmrFI CCNGG 3 cut(s) 44, 63, 249
BpiI GAAGAC 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 44, 63
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 188, 218, 405, 435
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 100, 116
BseRI GAGGAG 5 cut(s) 109, 193, 222, 403, 445
Bsh1236I CGCG 2 cut(s) 225, 278
BshFI GGCC 2 cut(s) 252, 294
BshNI GGYRCC 2 cut(s) 65, 261
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 3 cut(s) 44, 63, 236
BslFI GGGAC 2 cut(s) 340, 490
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 340, 490
BsnI GGCC 2 cut(s) 252, 294
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 3 cut(s) 240, 368, 415
BspACI CCGC 4 cut(s) 144, 207, 223, 377
BspANI GGCC 2 cut(s) 252, 294
BspCNI CTCAG 2 cut(s) 99, 115
BspFNI CGCG 2 cut(s) 225, 278
BspLI GGNNCC 2 cut(s) 67, 263
BspMI ACCTGC 1 cut(s) 487
BspQI GCTCTTC 2 cut(s) 193, 356
BspT107I GGYRCC 2 cut(s) 65, 261
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 240, 368, 415
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 193, 356
BstACI GRCGYC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 86, 102, 524
BstFNI CGCG 2 cut(s) 225, 278
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 227
BstKTI GATC 3 cut(s) 243, 371, 418
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 240, 368, 415
BstMWI GCNNNNNNNGC 2 cut(s) 72, 103
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 42, 61, 247
BstUI CGCG 2 cut(s) 225, 278
BstV2I GAAGAC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 252, 294
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 94, 325
BveI ACCTGC 1 cut(s) 487
CfoI GCGC 2 cut(s) 68, 227
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 81, 310, 347
CviJI RGCY 8 cut(s) 6, 97, 106, 165, 252, 294, 408, 466
CviKI_1 RGCY 8 cut(s) 6, 97, 106, 165, 252, 294, 408, 466
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 86, 102, 524
DinI GGCGCC 1 cut(s) 67
DpnI GATC 3 cut(s) 242, 370, 417
DpnII GATC 3 cut(s) 240, 368, 415
Eam1104I CTCTTC 2 cut(s) 193, 356
EarI CTCTTC 2 cut(s) 193, 356
Eco32I GATATC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 303
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 3 cut(s) 84, 313, 350
FaiI YATR 4 cut(s) 82, 311, 348, 405
FaqI GGGAC 2 cut(s) 340, 490
FatI CATG 3 cut(s) 80, 309, 346
FauI CCCGC 1 cut(s) 230
FbaI TGATCA 1 cut(s) 240
GlaI GCGC 2 cut(s) 67, 226
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 252, 294
HapII CCGG 3 cut(s) 44, 63, 236
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 68, 227
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 84, 313, 350
Hin6I GCGC 2 cut(s) 66, 225
HinP1I GCGC 2 cut(s) 66, 225
HinfI GANTC 2 cut(s) 14, 27
HpaII CCGG 3 cut(s) 44, 63, 236
HphI GGTGA 4 cut(s) 250, 298, 394, 436
Hpy188I TCNGA 4 cut(s) 13, 19, 130, 283
Hpy99I CGWCG 2 cut(s) 258, 283
HpyAV CCTTC 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 103
HpyF3I CTNAG 3 cut(s) 86, 102, 524
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 84, 313, 350
HspAI GCGC 2 cut(s) 66, 225
KasI GGCGCC 1 cut(s) 65
KpnI GGTACC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 240, 368, 415
LguI GCTCTTC 2 cut(s) 193, 356
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 57, 76, 234, 249, 261, 320, 381, 404, 482
MaeIII GTNAC 2 cut(s) 158, 382
MalI GATC 3 cut(s) 242, 370, 417
MboI GATC 3 cut(s) 240, 368, 415
MboII GAAGA 7 cut(s) 180, 183, 370, 373, 451, 454, 499
MhlI GDGCHC 1 cut(s) 523
MluI ACGCGT 1 cut(s) 276
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 2 cut(s) 153, 261
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 504
MspI CCGG 3 cut(s) 44, 63, 236
MspR9I CCNGG 3 cut(s) 44, 63, 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 225, 278
MwoI GCNNNNNNNGC 2 cut(s) 72, 103
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 44, 63
NdeII GATC 3 cut(s) 240, 368, 415
NlaIII CATG 3 cut(s) 84, 313, 350
NlaIV GGNNCC 2 cut(s) 67, 263
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PciSI GCTCTTC 2 cut(s) 193, 356
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 21
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 21
PscI ACATGT 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 67, 263
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SapI GCTCTTC 2 cut(s) 193, 356
SaqAI TTAA 1 cut(s) 504
Sau3AI GATC 3 cut(s) 240, 368, 415
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 3 cut(s) 44, 63, 249
SduI GDGCHC 1 cut(s) 523
SetI ASST 7 cut(s) 99, 108, 288, 410, 423, 468, 501
SfoI GGCGCC 1 cut(s) 67
SsiI CCGC 4 cut(s) 144, 207, 223, 377
SspDI GGCGCC 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 42, 61, 247
TaqI TCGA 4 cut(s) 77, 256, 299, 461
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 94, 325
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 298, 371
TspRI CASTG 2 cut(s) 94, 325
XceI RCATGY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.