Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0022397

Physical Location & Seq

Genomic Coordinates Reverse (-)

24279315 .. 24281359

Gene Structure 2045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G245700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCAATCTATTGTTCGGTTATTGTTCTTAACATACACGACGTTCATATCAATCATGTCGAAAAGGTGACTGCCAAATCCAATGCTAATCCCCATGCCAATAACGTAGACGATGACGGGAATGGCATTGGAACAAGCATTGGCGGGATTGCAAATGTCGCCAATGACATTGTCAATGGCATAGCCAACGCATTGAAACCGAACAACGAAAACTACACAGAATACCCGCCTCCCGCGCTAGCCCAAGAGTTCATCATGGTGCATAATGAGATTCGAAAGGCTGAGAACGTGCCGCCCTTAGTATGGAATGAGACGTTGGCCCAATTCGCAGAAGATTGGGCCAAGAAGCAGACCGATTGCGGTATGCGCCACTCGAAGGGCCAATATGGGGAGAACTTGTTCTGGGGTTTTAAGGCCCATTGGTTGCCGAGAGAGGCAGTGGAGGATTGGGCTCATGAGAAGCAATTTTACAATAGAGAAAAGCGACAATGCGCCCAAGACAAAGCTTGCGGCCACTACACGCAGATTGTATGGAAGACCACTCAACAAGTTGGGTGCGCTCGGTTCAGATGCTCCAACGGAAGTTTGCTCATTATTTGTGAATATGCTCCACCTGGGAATTATGCCAATGAGGACCCTTTTAATCCAGGCTCTCCACTTTCTCCTCCTCCTACTCCTAGTGCTACTTCTCCACCATCTTTGTCATCACCGTCATCGCCATCGCCACCGCCGCCAACACCAACACCAACACCGCCATTGCCACTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

255

Amino Acids

28.0

Weight (kDa)

5.83

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022397)

Species	Orthologous Gene IDs
malus_domestica	MD04G1110100.v1.1 MD12G1131300.v1.1
prunus_persica	Prupe.6G245700_v2.0.a1
pyrus_communis	pycom12g12700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	236
AciI	CCGC	9 cut(s)	144, 227, 234, 293, 360, 510, 728, 731, 752
AcoI	YGGCCR	1 cut(s)	511
AfiI	CCNNNNNNNGG	3 cut(s)	303, 376, 388
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	613, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	5 cut(s)	318, 339, 379, 414, 511
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	4 cut(s)	238, 369, 494, 560
AspS9I	GGNCC	5 cut(s)	319, 339, 379, 415, 634
AsuHPI	GGTGA	2 cut(s)	79, 699
AsuII	TTCGAA	1 cut(s)	274
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	452, 484
BbsI	GAAGAC	1 cut(s)	542
BccI	CCATC	2 cut(s)	703, 727
BciT130I	CCWGG	2 cut(s)	615, 648
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	239, 678
BisI	GCNGC	3 cut(s)	293, 511, 731
BlsI	GCNGC	3 cut(s)	294, 512, 732
Bme1390I	CCNGG	2 cut(s)	615, 648
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	5 cut(s)	319, 339, 379, 415, 634
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	615, 648
BmsI	GCATC	1 cut(s)	560
BmtI	GCTAGC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 376, 388
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	2 cut(s)	615, 648
BseDI	CCNNGG	1 cut(s)	614
BseLI	CCNNNNNNNGG	3 cut(s)	303, 376, 388
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	654, 657
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	5 cut(s)	320, 341, 381, 416, 513
BslI	CCNNNNNNNGG	3 cut(s)	303, 376, 388
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsnI	GGCC	5 cut(s)	320, 341, 381, 416, 513
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	454
BspACI	CCGC	9 cut(s)	144, 227, 234, 293, 360, 510, 728, 731, 752
BspANI	GGCC	5 cut(s)	320, 341, 381, 416, 513
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	636
BspOI	GCTAGC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	755
BssECI	CCNNGG	1 cut(s)	614
Bst2UI	CCWGG	2 cut(s)	615, 648
Bst4CI	ACNGT	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	240, 508
BstDEI	CTNAG	2 cut(s)	282, 298
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	4 cut(s)	238, 369, 494, 560
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 235, 326, 366, 730
BstNI	CCWGG	2 cut(s)	615, 648
BstSCI	CCNGG	2 cut(s)	613, 646
BstUI	CGCG	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	542
BsuRI	GGCC	5 cut(s)	320, 341, 381, 416, 513
BtgZI	GCGATG	2 cut(s)	699, 705
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	444, 761
Cac8I	GCNNGC	2 cut(s)	240, 508
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	4 cut(s)	238, 369, 494, 560
Cfr13I	GGNCC	5 cut(s)	319, 339, 379, 415, 634
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	4 cut(s)	56, 95, 256, 455
DdeI	CTNAG	2 cut(s)	282, 298
EaeI	YGGCCR	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	613, 646
EcoT38I	GRGCYC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	4 cut(s)	59, 98, 259, 458
FatI	CATG	4 cut(s)	55, 94, 255, 454
FauI	CCCGC	3 cut(s)	137, 234, 241
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	293, 511, 731
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	293, 511, 731
FspBI	CTAG	2 cut(s)	239, 678
GlaI	GCGC	4 cut(s)	237, 368, 493, 559
GluI	GCNGC	3 cut(s)	293, 511, 731
HaeIII	GGCC	5 cut(s)	320, 341, 381, 416, 513
HhaI	GCGC	4 cut(s)	238, 369, 494, 560
Hin1II	CATG	4 cut(s)	59, 98, 259, 458
Hin6I	GCGC	4 cut(s)	236, 367, 492, 558
HinP1I	GCGC	4 cut(s)	236, 367, 492, 558
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	79, 699
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	569
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	4 cut(s)	42, 105, 288, 314
HpyCH4V	TGCA	2 cut(s)	152, 262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 235, 326, 366, 730
HpyF3I	CTNAG	2 cut(s)	282, 298
HpySE526I	ACGT	4 cut(s)	42, 105, 288, 314
Hsp92II	CATG	4 cut(s)	59, 98, 259, 458
HspAI	GCGC	4 cut(s)	236, 367, 492, 558
LmnI	GCTCC	2 cut(s)	578, 613
LpnPI	CCDG	5 cut(s)	388, 600, 627, 633, 660
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	2 cut(s)	239, 678
MaeII	ACGT	4 cut(s)	42, 105, 288, 314
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	344, 547
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	3 cut(s)	323, 464, 619
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	6 cut(s)	240, 427, 436, 625, 675, 678
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	3 cut(s)	30, 411, 642
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	615, 648
MvaI	CCWGG	2 cut(s)	615, 648
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	5 cut(s)	158, 235, 326, 366, 730
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	59, 98, 259, 458
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	274
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	294, 512, 732
PpuMI	RGGWCCY	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	613, 646
PspGI	CCWGG	2 cut(s)	613, 646
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	5 cut(s)	319, 339, 379, 415, 634
PspPPI	RGGWCCY	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	30, 411, 642
SatI	GCNGC	3 cut(s)	293, 511, 731
Sau96I	GGNCC	5 cut(s)	319, 339, 379, 415, 634
ScrFI	CCNGG	2 cut(s)	615, 648
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	7 cut(s)	45, 69, 108, 291, 317, 508, 616
SfaNI	GCATC	1 cut(s)	560
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	323, 464, 619
SsiI	CCGC	9 cut(s)	144, 227, 234, 293, 360, 510, 728, 731, 752
SspMI	CTAG	2 cut(s)	239, 678
StyD4I	CCNGG	2 cut(s)	613, 646
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	4 cut(s)	45, 108, 291, 317
TaqI	TCGA	3 cut(s)	60, 274, 374
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	3 cut(s)	323, 464, 619
TauI	GCSGC	3 cut(s)	295, 513, 733
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	3 cut(s)	30, 411, 642
Tru9I	TTAA	3 cut(s)	30, 411, 642
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	35, 241
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	444
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	239, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.