Prupe.6G245800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014506
Physical Location & Seq
Forward (+)
24281423 .. 24283829
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G245800.1

Sequence Viewer

Length: 690 bp
ATGCCGATTCGGAAGCCCCGGATTTCTAAGGTTTCAATCAATTTTATCGTCTTTGGCGTGTTCCTCAGCTGCTTTCCAGGATGTATATTATCGGCGACCGTGACGCTGGGTTCGATTGTGATATACGACACGCACGAGTTCATAAAAGGTGTGAAGCCGATTGTGTATTTCACATGCCAAGGGGAGAACAAGACGGTGTTTCCAGATGTGAAGGAGAAGAACGTGTCGTATGAATTCAAAGGCGAAGAGTCTTGGCAGCCTCTGACAGAGTTTTCGAGTAAGAAGTGCAAGCGATGCGGGTTGTATGAGAAGGACACTTTTAAATCAGATGACATATTTGATGAGTGGGAGTTATGTCCTTCTGACTTCGATTCTTCTGATGGAAAATATGTCCGATTCAAGAGCAAGGAATTCAACGCTTCCTTTTCGTGTCCAAAGTGTCTACCTGCTGCTTCACCTGATTCCAAGTCCGCCACTGCGGCACATAAAGAAGAAAAGAAAAATGGATGGCATATTGTTCTAGTGATATTAATCGTTGTTATCGTTTTAGTAGTGTGTATTGTTGGGGGAGTAGTTGCACACAAGTTCTGGCAAAAGAAGAAGAGAGAGCAAGATCAAGCTCGGTTCCTAAAGCTGTTTGAAGATGGTGATGATATTGAAGAGGAATTGGGGCTTGACCATGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.01

Weight (kDa)

6.53

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53490
fragaria_vesca FvH4_6g14800
malus_domestica MD04G1110000.v1.1 MD12G1131500.v1.1
prunus_persica Prupe.6G245800_v2.0.a1
pyrus_communis pycom04g10600 pycom12g12720
rosa_chinensis RchiOBHm_Chr3g0468021
rosa_laevigata RLG00000024458
rosa_multiflora Rmu_sc0006706.1_g000009
rosa_roxburghii Rroxscaffold_6G00413170
rosa_rugosa Rorug03G0091500
rosa_samantha Rh3AG140200 Rh3BG161400 Rh3CG161500 Rh3DG162000
rosa_wichuraiana Rw3G013240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 442
AciI CCGC 3 cut(s) 297, 471, 479
AcsI RAATTY 2 cut(s) 233, 410
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 6 cut(s) 36, 238, 400, 415, 641, 659
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 69, 620, 634
AluI AGCT 3 cut(s) 69, 620, 634
AlwNI CAGNNNCTG 1 cut(s) 262
ApeKI GCWGC 3 cut(s) 69, 256, 449
ApoI RAATTY 2 cut(s) 233, 410
ArsI GACNNNNNNTTYG 4 cut(s) 94, 126, 256, 288
AseI ATTAAT 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 447, 659
BauI CACGAG 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 56, 268, 436
BccI CCATC 3 cut(s) 374, 501, 638
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 454
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 4 cut(s) 70, 257, 450, 480
BlsI GCNGC 4 cut(s) 71, 258, 451, 481
Bme1390I CCNGG 2 cut(s) 19, 78
BmiI GGNNCC 1 cut(s) 626
BmrFI CCNGG 2 cut(s) 19, 78
BmsI GCATC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 17, 178
Bse8I GATNNNNATC 1 cut(s) 530
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 17, 178
BseGI GGATG 2 cut(s) 86, 512
BseJI GATNNNNATC 1 cut(s) 530
BseMII CTCAG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 56, 268, 436
BseYI CCCAGC 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 19
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 3 cut(s) 297, 471, 479
BspCNI CTCAG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 626
BspMI ACCTGC 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 17, 178
BssMI GATC 1 cut(s) 613
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 100, 196
Bst6I CTCTTC 3 cut(s) 240, 596, 654
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 27, 65
BstF5I GGATG 2 cut(s) 86, 512
BstKTI GATC 1 cut(s) 616
BstMBI GATC 1 cut(s) 613
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 294, 479
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 17, 76
BstV1I GCAGC 3 cut(s) 56, 268, 436
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 86, 512
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 262
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 174, 680
CviJI RGCY 7 cut(s) 16, 69, 157, 259, 620, 634, 673
CviKI_1 RGCY 7 cut(s) 16, 69, 157, 259, 620, 634, 673
DdeI CTNAG 2 cut(s) 27, 65
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 240, 596, 654
EarI CTCTTC 3 cut(s) 240, 596, 654
EciI GGCGGA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 233, 410
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 177, 683
FatI CATG 2 cut(s) 173, 679
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 70, 257, 450, 480
FokI GGATG 2 cut(s) 93, 519
Fsp4HI GCNGC 4 cut(s) 70, 257, 450, 480
FspBI CTAG 1 cut(s) 521
GluI GCNGC 4 cut(s) 70, 257, 450, 480
GsaI CCCAGC 1 cut(s) 110
HapII CCGG 1 cut(s) 19
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 177, 683
HinfI GANTC 5 cut(s) 7, 248, 371, 396, 461
HpaII CCGG 1 cut(s) 19
HphI GGTGA 2 cut(s) 447, 659
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 6 cut(s) 12, 264, 328, 364, 379, 395
Hpy188III TCNNGA 2 cut(s) 203, 400
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 205, 304, 369
HpyCH4III ACNGT 2 cut(s) 100, 196
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 288, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 479
HpyF3I CTNAG 2 cut(s) 27, 65
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 177, 683
Kzo9I GATC 1 cut(s) 613
LpnPI CCDG 8 cut(s) 32, 63, 90, 92, 216, 459, 471, 574
Lsp1109I GCAGC 3 cut(s) 56, 268, 436
LweI GCATC 1 cut(s) 284
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 8 cut(s) 229, 257, 366, 503, 610, 613, 653, 671
MluCI AATT 4 cut(s) 40, 233, 410, 665
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 74, 270, 655
MseI TTAA 2 cut(s) 321, 530
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 19, 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 294, 479
NciI CCSGG 1 cut(s) 19
NdeII GATC 1 cut(s) 613
NlaIII CATG 2 cut(s) 177, 683
NlaIV GGNNCC 1 cut(s) 626
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 177
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 110, 132, 540
PfeI GAWTC 4 cut(s) 7, 371, 396, 461
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 4 cut(s) 71, 258, 451, 481
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 321, 530
SatI GCNGC 4 cut(s) 70, 257, 450, 480
Sau3AI GATC 1 cut(s) 613
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 19, 78
SetI ASST 8 cut(s) 33, 71, 151, 225, 448, 460, 622, 636
SfaNI GCATC 1 cut(s) 284
Sse9I AATT 4 cut(s) 40, 233, 410, 665
SsiI CCGC 3 cut(s) 297, 471, 479
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 17, 76
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 100, 196
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 113, 275, 369
TasI AATT 4 cut(s) 40, 233, 410, 665
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 4 cut(s) 7, 371, 396, 461
Tru1I TTAA 2 cut(s) 321, 530
Tru9I TTAA 2 cut(s) 321, 530
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 69, 256, 449
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 130, 246
TspRI CASTG 1 cut(s) 481
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 2 cut(s) 233, 410
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.