Prupe.6G278900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0020995
Physical Location & Seq
Forward (+)
26146383 .. 26149592
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G278900.1

Sequence Viewer

Length: 705 bp
ATGCGCACTCGACAACATGTGCTGTCCAGCCCGCCATTAGACCTAAGTCATCATTTCGGTGGGTGCTCTGAACCTTTCTCTCTATGTCCACTATCTCTGAGAGCATCTAATACATTCTTGCCCCTATTAGTTACCATAGCAAGGCTACCATGTTCCAGCACAGTGTCTTCCACAACATCGCTTAGCATCTCAATGGAACGGCAAAACCCAAAGATACATAGTTTCCTGCCCGTATCAAGGCCATTTGTCCAGTCGCTATCAGTCATCACCGGCGACGAGGAGGTCTCCACCTTCACCTCCGGCGGCGGCGCTGGAGCTCGGGCGGCGGAGGACCTCTTGCTGGGCTTCCCTGCTGCCTTCCTCTGTTTCTGGGTTTCAGCCAAGCCTTCGCAGACGGGCGGCTTCTTCAGTTGTGTCGAAGGTGCCAAGCCAGGGCTTGGATCTGGTGGATCTGGTATGACCACCACGGAGTCGAAGCACCAAGTAAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTCGAGCTGCTCTCCAGCAAAGATGAGGTTGCTCTGCTGATTGTAGTAGTGGTGGTCCTTTGTGGTGGCTGGTGGGCAACGTCGCAGTTACGAAGCTTGGATAGTATAGAACATGGGCTGTATTGTTCAGCCCATCCACGGCAGCCTCTCGTATGCCAGGAAGCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

24.66

Weight (kDa)

6.64

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65349
prunus_persica Prupe.6G278900_v2.0.a1
pyrus_communis pycom04g09580 pycom11g19920
rosa_roxburghii Rroxscaffold_5G00382740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 6 cut(s) 32, 303, 306, 323, 326, 399
AclWI GGATC 2 cut(s) 448, 457
AcuI CTGAAG 1 cut(s) 391
AfiI CCNNNNNNNGG 7 cut(s) 141, 237, 340, 432, 437, 487, 672
AflIII ACRYGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 430, 690
AluBI AGCT 3 cut(s) 317, 541, 630
AluI AGCT 3 cut(s) 317, 541, 630
Alw21I GWGCWC 2 cut(s) 68, 319
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 448, 457
Ama87I CYCGRG 2 cut(s) 318, 536
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 353, 541, 676
AspLEI GCGC 2 cut(s) 6, 311
AspS9I GGNCC 2 cut(s) 331, 589
AsuHPI GGTGA 2 cut(s) 259, 286
AvaI CYCGRG 2 cut(s) 318, 536
AvaII GGWCC 2 cut(s) 331, 589
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 68, 319
BbvI GCAGC 3 cut(s) 340, 528, 688
BccI CCATC 2 cut(s) 539, 675
BceAI ACGGC 3 cut(s) 215, 683, 689
BciT130I CCWGG 2 cut(s) 432, 692
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 7 cut(s) 304, 307, 324, 354, 400, 542, 677
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 7 cut(s) 305, 308, 325, 355, 401, 543, 678
Bme1390I CCNGG 2 cut(s) 432, 692
Bme18I GGWCC 2 cut(s) 331, 589
BmeT110I CYCGRG 2 cut(s) 318, 536
BmgT120I GGNCC 2 cut(s) 331, 589
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 432, 692
BmsI GCATC 2 cut(s) 113, 195
BoxI GACNNNNGTC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 530, 562
BpmI CTGGAG 2 cut(s) 333, 532
Bpu1102I GCTNAGC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 431, 465, 671
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 237, 340, 432, 437, 487, 672
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 432, 692
BseDI CCNNGG 3 cut(s) 431, 465, 671
BseGI GGATG 3 cut(s) 511, 531, 667
BseLI CCNNNNNNNGG 7 cut(s) 141, 237, 340, 432, 437, 487, 672
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 340, 528, 688
BseYI CCCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 68, 319
BsiHKCI CYCGRG 2 cut(s) 318, 536
BsiSI CCGG 2 cut(s) 270, 300
BslI CCNNNNNNNGG 7 cut(s) 141, 237, 340, 432, 437, 487, 672
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 318, 536
Bsp1286I GDGCHC 2 cut(s) 68, 319
Bsp143I GATC 2 cut(s) 440, 449
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 6 cut(s) 32, 303, 306, 323, 326, 399
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 424
BspPI GGATC 2 cut(s) 448, 457
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 431, 465, 671
BssMI GATC 2 cut(s) 440, 449
Bst2UI CCWGG 2 cut(s) 432, 692
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 44, 98, 182
BstDSI CCRYGG 2 cut(s) 465, 671
BstF5I GGATG 3 cut(s) 511, 531, 667
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 2 cut(s) 6, 311
BstKTI GATC 2 cut(s) 443, 452
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 440, 449
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 2 cut(s) 432, 692
BstNSI RCATGY 1 cut(s) 20
BstPAI GACNNNNGTC 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 430, 690
BstV1I GCAGC 3 cut(s) 340, 528, 688
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 440, 449
BstYI RGATCY 2 cut(s) 440, 449
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 2 cut(s) 465, 671
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 3 cut(s) 511, 531, 667
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 2 cut(s) 6, 311
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 331, 589
CviAII CATG 3 cut(s) 17, 150, 647
DdeI CTNAG 3 cut(s) 44, 98, 182
DpnI GATC 2 cut(s) 442, 451
DpnII GATC 2 cut(s) 440, 449
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 331, 589
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 391
Eco88I CYCGRG 2 cut(s) 318, 536
EcoICRI GAGCTC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 430, 690
EcoT38I GRGCYC 1 cut(s) 319
FaeI CATG 3 cut(s) 20, 153, 650
FaiI YATR 9 cut(s) 18, 85, 137, 151, 219, 458, 641, 648, 688
FatI CATG 3 cut(s) 16, 149, 646
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 7 cut(s) 304, 307, 324, 354, 400, 542, 677
FokI GGATG 3 cut(s) 518, 518, 654
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 7 cut(s) 304, 307, 324, 354, 400, 542, 677
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 310
GluI GCNGC 7 cut(s) 304, 307, 324, 354, 400, 542, 677
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 2 cut(s) 333, 532
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 241
HapII CCGG 2 cut(s) 270, 300
HhaI GCGC 2 cut(s) 6, 311
Hin1II CATG 3 cut(s) 20, 153, 650
Hin6I GCGC 2 cut(s) 4, 309
HinP1I GCGC 2 cut(s) 4, 309
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 2 cut(s) 470, 495
HpaII CCGG 2 cut(s) 270, 300
HphI GGTGA 2 cut(s) 259, 286
Hpy166II GTNNAC 2 cut(s) 89, 494
Hpy188I TCNGA 2 cut(s) 70, 99
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 2 cut(s) 89, 494
Hpy99I CGWCG 2 cut(s) 278, 619
HpyAV CCTTC 5 cut(s) 301, 367, 396, 413, 509
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 3 cut(s) 44, 98, 182
HpySE526I ACGT 1 cut(s) 614
Hsp92II CATG 3 cut(s) 20, 153, 650
HspAI GCGC 2 cut(s) 4, 309
Kzo9I GATC 2 cut(s) 440, 449
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 3 cut(s) 340, 528, 688
LweI GCATC 2 cut(s) 113, 195
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 130, 621
MalI GATC 2 cut(s) 442, 451
MboI GATC 2 cut(s) 440, 449
MboII GAAGA 2 cut(s) 159, 397
MflI RGATCY 2 cut(s) 440, 449
MhlI GDGCHC 2 cut(s) 68, 319
MlyI GAGTC 2 cut(s) 479, 489
MnlI CCTC 9 cut(s) 271, 274, 307, 322, 344, 371, 545, 553, 690
MslI CAYNNNNRTG 2 cut(s) 57, 191
MspI CCGG 2 cut(s) 270, 300
MspR9I CCNGG 2 cut(s) 432, 692
MvaI CCWGG 2 cut(s) 432, 692
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 440, 449
NlaIII CATG 3 cut(s) 20, 153, 650
NlaIV GGNNCC 1 cut(s) 424
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 536
PciI ACATGT 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 7 cut(s) 305, 308, 325, 355, 401, 543, 678
PleI GAGTC 2 cut(s) 478, 489
PpsI GAGTC 2 cut(s) 478, 489
PpuMI RGGWCCY 1 cut(s) 331
PscI ACATGT 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 2 cut(s) 430, 690
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 430, 690
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 331, 589
PspPPI RGGWCCY 1 cut(s) 331
PspXI VCTCGAGB 1 cut(s) 536
PsuI RGATCY 2 cut(s) 440, 449
RseI CAYNNNNRTG 2 cut(s) 57, 191
SacI GAGCTC 1 cut(s) 319
SatI GCNGC 7 cut(s) 304, 307, 324, 354, 400, 542, 677
Sau3AI GATC 2 cut(s) 440, 449
Sau96I GGNCC 2 cut(s) 331, 589
SchI GAGTC 2 cut(s) 479, 489
ScrFI CCNGG 2 cut(s) 432, 692
SduI GDGCHC 2 cut(s) 68, 319
SfaNI GCATC 2 cut(s) 113, 195
Sfr274I CTCGAG 1 cut(s) 536
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 2 cut(s) 331, 589
SlaI CTCGAG 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 57, 191
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SsiI CCGC 6 cut(s) 32, 303, 306, 323, 326, 399
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 430, 690
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 617
TaqI TCGA 4 cut(s) 10, 417, 473, 537
TauI GCSGC 4 cut(s) 306, 309, 326, 402
TscAI CASTG 1 cut(s) 168
TseI GCWGC 3 cut(s) 353, 541, 676
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 331, 589
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.