Rroxscaffold_5G00382740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0020995
Physical Location & Seq
Reverse (-)
62553607 .. 62554668
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382740.1

Sequence Viewer

Length: 264 bp
ATGCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTCCTCTTCTTGGCGCCACCGCGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

8.95

Weight (kDa)

4.05

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65349
prunus_persica Prupe.6G278900_v2.0.a1
pyrus_communis pycom04g09580 pycom11g19920
rosa_roxburghii Rroxscaffold_5G00382740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 63, 65, 125, 175
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 53, 193
AjnI CCWGG 2 cut(s) 78, 192
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 2 cut(s) 134, 239
AoxI GGCC 2 cut(s) 126, 202
ApeKI GCWGC 2 cut(s) 139, 163
AspLEI GCGC 2 cut(s) 59, 163
AspS9I GGNCC 1 cut(s) 169
AvaI CYCGRG 2 cut(s) 134, 239
AvaII GGWCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 56
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 126, 150
BccI CCATC 2 cut(s) 212, 242
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 80, 194
BcoDI GTCTC 1 cut(s) 62
BfoI RGCGCY 2 cut(s) 60, 164
BisI GCNGC 3 cut(s) 126, 140, 164
BlsI GCNGC 3 cut(s) 127, 141, 165
Bme1390I CCNGG 2 cut(s) 80, 194
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 2 cut(s) 134, 239
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 80, 194
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 193
BseBI CCWGG 2 cut(s) 80, 194
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 109, 184
BseLI CCNNNNNNNGG 2 cut(s) 53, 193
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 126, 150
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 204
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 134, 239
BsiSI CCGG 2 cut(s) 147, 172
BslI CCNNNNNNNGG 2 cut(s) 53, 193
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsnI GGCC 2 cut(s) 128, 204
BsoBI CYCGRG 2 cut(s) 134, 239
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 13, 154, 196
BspACI CCGC 4 cut(s) 63, 65, 125, 175
BspANI GGCC 2 cut(s) 128, 204
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 13, 154, 196
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 80, 194
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 109, 184
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 2 cut(s) 60, 164
BstHHI GCGC 2 cut(s) 59, 163
BstKTI GATC 3 cut(s) 16, 157, 199
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 13, 154, 196
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 80, 194
BstSCI CCNGG 2 cut(s) 78, 192
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 126, 150
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 204
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 109, 184
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 59, 163
Cfr13I GGNCC 1 cut(s) 169
Cfr42I CCGCGG 1 cut(s) 66
CsiI ACCWGGT 1 cut(s) 78
CviJI RGCY 4 cut(s) 25, 128, 139, 204
CviKI_1 RGCY 4 cut(s) 25, 128, 139, 204
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 15, 156, 198
DpnII GATC 3 cut(s) 13, 154, 196
DraIII CACNNNGTG 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 169
Eco52I CGGCCG 1 cut(s) 126
Eco88I CYCGRG 2 cut(s) 134, 239
EcoRII CCWGG 2 cut(s) 78, 192
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 62
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 126, 140, 164
FokI GGATG 2 cut(s) 116, 191
Fsp4HI GCNGC 3 cut(s) 126, 140, 164
GlaI GCGC 2 cut(s) 58, 162
GluI GCNGC 3 cut(s) 126, 140, 164
HaeII RGCGCY 2 cut(s) 60, 164
HaeIII GGCC 2 cut(s) 128, 204
HapII CCGG 2 cut(s) 147, 172
HhaI GCGC 2 cut(s) 59, 163
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 2 cut(s) 57, 161
HinP1I GCGC 2 cut(s) 57, 161
HinfI GANTC 2 cut(s) 93, 231
HpaII CCGG 2 cut(s) 147, 172
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 101, 241
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 107, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 2 cut(s) 57, 161
KasI GGCGCC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 3 cut(s) 13, 154, 196
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 65, 86, 92, 143, 152, 160, 179, 185, 206
Lsp1109I GCAGC 2 cut(s) 126, 150
LweI GCATC 1 cut(s) 169
MabI ACCWGGT 1 cut(s) 78
MalI GATC 3 cut(s) 15, 156, 198
MboI GATC 3 cut(s) 13, 154, 196
MboII GAAGA 6 cut(s) 8, 29, 32, 35, 41, 164
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 78
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 87, 225
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 5 cut(s) 57, 143, 194, 221, 248
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 147, 172
MspR9I CCNGG 2 cut(s) 80, 194
MvaI CCWGG 2 cut(s) 80, 194
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 57
NdeII GATC 3 cut(s) 13, 154, 196
NlaIV GGNNCC 1 cut(s) 58
PaeR7I CTCGAG 2 cut(s) 134, 239
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 3 cut(s) 127, 141, 165
PleI GAGTC 2 cut(s) 87, 225
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 87, 225
Psp6I CCWGG 2 cut(s) 78, 192
PspGI CCWGG 2 cut(s) 78, 192
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 169
PspXI VCTCGAGB 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 196
SacII CCGCGG 1 cut(s) 66
SatI GCNGC 3 cut(s) 126, 140, 164
Sau3AI GATC 3 cut(s) 13, 154, 196
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 2 cut(s) 87, 225
ScrFI CCNGG 2 cut(s) 80, 194
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 37, 84, 141, 240
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 58
Sfr274I CTCGAG 2 cut(s) 134, 239
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 2 cut(s) 134, 239
SmlI CTYRAG 2 cut(s) 134, 239
SmoI CTYRAG 2 cut(s) 134, 239
SsiI CCGC 4 cut(s) 63, 65, 125, 175
SspDI GGCGCC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 78, 192
TaqI TCGA 4 cut(s) 135, 216, 234, 240
TauI GCSGC 1 cut(s) 128
TseI GCWGC 2 cut(s) 139, 163
TspGWI ACGGA 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XhoI CTCGAG 2 cut(s) 134, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.