pycom11g19920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0020995
Physical Location & Seq
Forward (+)
22468706 .. 22473779
5074 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19920.4

Sequence Viewer

Length: 1239 bp
ATGTTATGTGATAGTTGTGACCCATCCATTGGTCGAAGTTGGAGGACGAAAATCCAAAACCAAAATAAAACTATTCCCTGTTCAGTGAAGGATGAGATCACAAGCATCATTCCGAATTCAGAAACCCCCACGGAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCGTCCTCCAGCTGCTTACCGGCATAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCTTTCGCATTATCAATGGTATCACTACTCTCGACCTCCAACGTTATCAAACCACCACGGAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTATCAGAACTCTCTACCTCCAACGTTATCGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATCCCACCACGCAGACGAAGTACCAGGTGCAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGTGTCCTTCCATCCTCGAGCTGCTTACCTGCAAAGATCAACCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGGATTTTGGTCTTCACATTGTCAATTGTATCAGAACTTTCAACTTCCAGAGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATTTGCATACCACCACGCAGTCGGAGAACCAAGTGGAGAGTCGATTCCTTTTGAATGTTATAATCGGCAAGCGTGCGACCATCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCATTGCCTTCACATTATCAATGGTATCCGAGCTTTCAACTTCCAAGGTGATGGTCTTTCCGGTAAGTGTCTTGACAAAGATTTGCATGCCACCACGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

45.95

Weight (kDa)

6.85

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65349
prunus_persica Prupe.6G278900_v2.0.a1
pyrus_communis pycom04g09580 pycom11g19920
rosa_roxburghii Rroxscaffold_5G00382740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
AbsI CCTCGAGG 1 cut(s) 1184
Acc36I ACCTGC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 2 cut(s) 157, 352
AccIII TCCGGA 2 cut(s) 237, 432
AciI CCGC 4 cut(s) 181, 376, 650, 1070
AclI AACGTT 2 cut(s) 310, 505
AclWI GGATC 3 cut(s) 270, 465, 921
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 1 cut(s) 115
AdeI CACNNNGTG 1 cut(s) 1027
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 8 cut(s) 29, 133, 259, 454, 574, 682, 752, 910
AgsI TTSAA 7 cut(s) 592, 724, 820, 952, 1081, 1141, 1180
AjnI CCWGG 6 cut(s) 258, 453, 567, 681, 909, 1023
AluBI AGCT 7 cut(s) 205, 400, 628, 856, 947, 1084, 1175
AluI AGCT 7 cut(s) 205, 400, 628, 856, 947, 1084, 1175
Alw26I GTCTC 3 cut(s) 231, 426, 1007
AlwI GGATC 3 cut(s) 270, 465, 921
AlwNI CAGNNNCTG 1 cut(s) 1108
Ama87I CYCGRG 2 cut(s) 623, 1184
Aor13HI TCCGGA 2 cut(s) 237, 432
AoxI GGCC 1 cut(s) 1071
ApeKI GCWGC 6 cut(s) 205, 400, 628, 652, 856, 1084
ApoI RAATTY 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 1127
AspS9I GGNCC 2 cut(s) 235, 430
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 4 cut(s) 160, 355, 974, 1202
AvaI CYCGRG 2 cut(s) 623, 1184
AvaII GGWCC 2 cut(s) 235, 430
BbsI GAAGAC 5 cut(s) 506, 521, 686, 734, 749
BbvI GCAGC 6 cut(s) 192, 387, 615, 639, 843, 1071
BccI CCATC 7 cut(s) 31, 626, 731, 854, 959, 1082, 1187
BciT130I CCWGG 6 cut(s) 260, 455, 569, 683, 911, 1025
BciVI GTATCC 1 cut(s) 950
BcnI CCSGG 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 231, 426, 1007
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 1 cut(s) 950
BglII AGATCT 2 cut(s) 538, 1222
BisI GCNGC 7 cut(s) 206, 401, 629, 653, 857, 1071, 1085
BlsI GCNGC 7 cut(s) 207, 402, 630, 654, 858, 1072, 1086
Bme1390I CCNGG 7 cut(s) 260, 455, 569, 683, 747, 911, 1025
Bme18I GGWCC 2 cut(s) 235, 430
BmeT110I CYCGRG 2 cut(s) 623, 1184
BmgT120I GGNCC 2 cut(s) 235, 430
BmrFI CCNGG 7 cut(s) 260, 455, 569, 683, 747, 911, 1025
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 114, 553
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 5 cut(s) 506, 521, 686, 734, 749
BpmI CTGGAG 3 cut(s) 185, 380, 836
BpuMI CCSGG 1 cut(s) 747
BsaBI GATNNNNATC 2 cut(s) 543, 1227
BsaJI CCNNGG 4 cut(s) 129, 324, 958, 1008
BsaWI WCCGGW 3 cut(s) 237, 432, 974
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 133, 259, 454, 574, 682, 752, 910
Bse118I RCCGGY 2 cut(s) 212, 407
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 916
Bse8I GATNNNNATC 2 cut(s) 543, 1227
BseAI TCCGGA 2 cut(s) 237, 432
BseBI CCWGG 6 cut(s) 260, 455, 569, 683, 911, 1025
BseDI CCNNGG 4 cut(s) 129, 324, 958, 1008
BseGI GGATG 8 cut(s) 23, 97, 175, 370, 544, 618, 846, 1054
BseJI GATNNNNATC 2 cut(s) 543, 1227
BseLI CCNNNNNNNGG 8 cut(s) 29, 133, 259, 454, 574, 682, 752, 910
BseMI GCAATG 1 cut(s) 916
BseNI ACTGG 1 cut(s) 519
BseXI GCAGC 6 cut(s) 192, 387, 615, 639, 843, 1071
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 1 cut(s) 1073
BsiHKCI CYCGRG 2 cut(s) 623, 1184
BsiSI CCGG 6 cut(s) 213, 238, 408, 433, 747, 975
BslI CCNNNNNNNGG 8 cut(s) 29, 133, 259, 454, 574, 682, 752, 910
BsmAI GTCTC 3 cut(s) 231, 426, 1007
BsmBI CGTCTC 1 cut(s) 1007
BsmI GAATGC 4 cut(s) 250, 445, 673, 1129
BsnI GGCC 1 cut(s) 1073
BsoBI CYCGRG 2 cut(s) 623, 1184
Bsp13I TCCGGA 2 cut(s) 237, 432
Bsp143I GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
BspACI CCGC 4 cut(s) 181, 376, 650, 1070
BspANI GGCC 1 cut(s) 1073
BspEI TCCGGA 2 cut(s) 237, 432
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 3 cut(s) 270, 465, 921
BsrDI GCAATG 1 cut(s) 916
BsrFI RCCGGY 2 cut(s) 212, 407
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 2 cut(s) 212, 407
BssECI CCNNGG 4 cut(s) 129, 324, 958, 1008
BssMI GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
BssT1I CCWWGG 1 cut(s) 958
Bst2UI CCWGG 6 cut(s) 260, 455, 569, 683, 911, 1025
BstC8I GCNNGC 5 cut(s) 836, 840, 1002, 1089, 1093
BstDSI CCRYGG 3 cut(s) 129, 324, 1008
BstF5I GGATG 8 cut(s) 23, 97, 175, 370, 544, 618, 846, 1054
BstKTI GATC 8 cut(s) 99, 265, 460, 541, 646, 916, 1102, 1225
BstMAI GTCTC 3 cut(s) 231, 426, 1007
BstMBI GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
BstNI CCWGG 6 cut(s) 260, 455, 569, 683, 911, 1025
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 7 cut(s) 258, 453, 567, 681, 745, 909, 1023
BstV1I GCAGC 6 cut(s) 192, 387, 615, 639, 843, 1071
BstV2I GAAGAC 5 cut(s) 506, 521, 686, 734, 749
BstX2I RGATCY 4 cut(s) 262, 457, 538, 1222
BstXI CCANNNNNNTGG 2 cut(s) 737, 965
BstYI RGATCY 4 cut(s) 262, 457, 538, 1222
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 1 cut(s) 1073
BtgI CCRYGG 3 cut(s) 129, 324, 1008
BtsCI GGATG 8 cut(s) 23, 97, 175, 370, 544, 618, 846, 1054
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 5 cut(s) 836, 840, 1002, 1089, 1093
CaiI CAGNNNCTG 1 cut(s) 1108
Cfr10I RCCGGY 2 cut(s) 212, 407
Cfr13I GGNCC 2 cut(s) 235, 430
CsiI ACCWGGT 2 cut(s) 567, 1023
Csp6I GTAC 1 cut(s) 565
CviAII CATG 1 cut(s) 1001
CviQI GTAC 1 cut(s) 565
DpnI GATC 8 cut(s) 98, 264, 459, 540, 645, 915, 1101, 1224
DpnII GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
DraIII CACNNNGTG 1 cut(s) 1027
EaeI YGGCCR 1 cut(s) 1071
Eco130I CCWWGG 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 235, 430
Eco88I CYCGRG 2 cut(s) 623, 1184
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 6 cut(s) 258, 453, 567, 681, 909, 1023
EcoT14I CCWWGG 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 958
Esp3I CGTCTC 1 cut(s) 1007
FaeI CATG 1 cut(s) 1004
FaiI YATR 6 cut(s) 7, 218, 774, 827, 1002, 1234
FatI CATG 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 157, 352
Fnu4HI GCNGC 7 cut(s) 206, 401, 629, 653, 857, 1071, 1085
FokI GGATG 8 cut(s) 10, 104, 182, 377, 531, 605, 833, 1061
Fsp4HI GCNGC 7 cut(s) 206, 401, 629, 653, 857, 1071, 1085
GluI GCNGC 7 cut(s) 206, 401, 629, 653, 857, 1071, 1085
GsuI CTGGAG 3 cut(s) 185, 380, 836
HaeIII GGCC 1 cut(s) 1073
HapII CCGG 6 cut(s) 213, 238, 408, 433, 747, 975
Hin1II CATG 1 cut(s) 1004
HpaII CCGG 6 cut(s) 213, 238, 408, 433, 747, 975
HphI GGTGA 4 cut(s) 160, 355, 974, 1202
Hpy166II GTNNAC 4 cut(s) 158, 353, 581, 1037
Hpy188I TCNGA 7 cut(s) 114, 121, 488, 716, 790, 944, 1172
Hpy188III TCNNGA 8 cut(s) 238, 299, 433, 730, 761, 986, 1046, 1138
Hpy8I GTNNAC 4 cut(s) 158, 353, 581, 1037
HpyCH4IV ACGT 2 cut(s) 310, 505
HpyCH4V TGCA 6 cut(s) 544, 574, 639, 772, 1000, 1228
HpySE526I ACGT 2 cut(s) 310, 505
Hsp92II CATG 1 cut(s) 1004
Kpn2I TCCGGA 2 cut(s) 237, 432
Kzo9I GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
Lsp1109I GCAGC 6 cut(s) 192, 387, 615, 639, 843, 1071
LweI GCATC 2 cut(s) 114, 553
MabI ACCWGGT 2 cut(s) 567, 1023
MaeII ACGT 2 cut(s) 310, 505
MaeIII GTNAC 1 cut(s) 17
MalI GATC 8 cut(s) 98, 264, 459, 540, 645, 915, 1101, 1224
MboI GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
MboII GAAGA 8 cut(s) 506, 521, 686, 734, 749, 776, 881, 1069
MfeI CAATTG 2 cut(s) 706, 1162
MflI RGATCY 4 cut(s) 262, 457, 538, 1222
MluCI AATT 3 cut(s) 115, 706, 1162
MlyI GAGTC 9 cut(s) 153, 196, 233, 348, 391, 428, 576, 814, 1032
MmeI TCCRAC 4 cut(s) 20, 331, 526, 768
MroI TCCGGA 2 cut(s) 237, 432
MroXI GAANNNNTTC 1 cut(s) 1127
MspA1I CMGCKG 4 cut(s) 205, 400, 652, 856
MspI CCGG 6 cut(s) 213, 238, 408, 433, 747, 975
MspR9I CCNGG 7 cut(s) 260, 455, 569, 683, 747, 911, 1025
MunI CAATTG 2 cut(s) 706, 1162
Mva1269I GAATGC 4 cut(s) 250, 445, 673, 1129
MvaI CCWGG 6 cut(s) 260, 455, 569, 683, 911, 1025
NciI CCSGG 1 cut(s) 747
NdeII GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
NlaIII CATG 1 cut(s) 1004
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 1004
PaeR7I CTCGAG 2 cut(s) 623, 1184
PctI GAATGC 4 cut(s) 250, 445, 673, 1129
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 2 cut(s) 810, 1141
PflMI CCANNNNNTGG 1 cut(s) 29
PfoI TCCNGGA 4 cut(s) 258, 453, 681, 909
PkrI GCNGC 7 cut(s) 207, 402, 630, 654, 858, 1072, 1086
PleI GAGTC 9 cut(s) 153, 195, 232, 348, 390, 427, 576, 813, 1032
PpsI GAGTC 9 cut(s) 153, 195, 232, 348, 390, 427, 576, 813, 1032
PsiI TTATAA 1 cut(s) 827
Psp1406I AACGTT 2 cut(s) 310, 505
Psp6I CCWGG 6 cut(s) 258, 453, 567, 681, 909, 1023
PspGI CCWGG 6 cut(s) 258, 453, 567, 681, 909, 1023
PspPI GGNCC 2 cut(s) 235, 430
PspXI VCTCGAGB 2 cut(s) 623, 1184
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 4 cut(s) 262, 457, 538, 1222
PvuII CAGCTG 3 cut(s) 205, 400, 856
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SatI GCNGC 7 cut(s) 206, 401, 629, 653, 857, 1071, 1085
Sau3AI GATC 8 cut(s) 96, 262, 457, 538, 643, 913, 1099, 1222
Sau96I GGNCC 2 cut(s) 235, 430
SchI GAGTC 9 cut(s) 153, 196, 233, 348, 391, 428, 576, 814, 1032
ScrFI CCNGG 7 cut(s) 260, 455, 569, 683, 747, 911, 1025
SexAI ACCWGGT 2 cut(s) 567, 1023
SfaNI GCATC 2 cut(s) 114, 553
Sfr274I CTCGAG 2 cut(s) 623, 1184
SinI GGWCC 2 cut(s) 235, 430
SlaI CTCGAG 2 cut(s) 623, 1184
SmlI CTYRAG 2 cut(s) 623, 1184
SmoI CTYRAG 2 cut(s) 623, 1184
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 3 cut(s) 115, 706, 1162
SsiI CCGC 4 cut(s) 181, 376, 650, 1070
StyD4I CCNGG 7 cut(s) 258, 453, 567, 681, 745, 909, 1023
StyI CCWWGG 1 cut(s) 958
TaiI ACGT 2 cut(s) 313, 508
TaqI TCGA 5 cut(s) 34, 300, 624, 808, 1185
TasI AATT 3 cut(s) 115, 706, 1162
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 2 cut(s) 810, 1141
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 6 cut(s) 205, 400, 628, 652, 856, 1084
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 5 cut(s) 146, 184, 341, 379, 1025
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 235, 430
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 2 cut(s) 575, 1031
XhoI CTCGAG 2 cut(s) 623, 1184
XmiI GTMKAC 2 cut(s) 157, 352
XmnI GAANNNNTTC 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.