Prupe.6G282100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022469
Physical Location & Seq
Forward (+)
26315742 .. 26316630
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G282100.1

Sequence Viewer

Length: 228 bp
ATGGCAGCTGCTCCGGATCCTTTCTGGTCTTCATTGGCCCCCAATGATCAGTTTCAAAACGATCAGCTTCACGACGTCCTCATCAGTGACCCAAAGTTTGCTGTCCACGGTGAGATTATGATGCTGGTTCTGGTTCTGCTGTTTGCCACCTTGTTCATCCTTCTCTTACTCTTCCCCTACACAAAGAAATGTGGTGGTCCCAATCATGATATTCAGTTCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.44

Weight (kDa)

5.26

Isoelectric Point (pI)

21.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022469)

Species Orthologous Gene IDs
prunus_persica Prupe.6G282100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462331
rosa_samantha Rh3CG120500 Rh3DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 13
AclWI GGATC 2 cut(s) 11, 24
AcyI GRCGYC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 56, 220
AluBI AGCT 2 cut(s) 8, 67
AluI AGCT 2 cut(s) 8, 67
AlwI GGATC 2 cut(s) 11, 24
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 5, 8
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 2 cut(s) 37, 197
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 17
BclI TGATCA 1 cut(s) 46
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 37, 197
BmiI GGNNCC 3 cut(s) 18, 39, 199
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 3 cut(s) 16, 46, 61
BspANI GGCC 1 cut(s) 38
BspEI TCCGGA 1 cut(s) 13
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 18, 39, 199
BspPI GGATC 2 cut(s) 11, 24
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 16, 46, 61
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 3 cut(s) 19, 49, 64
BstMBI GATC 3 cut(s) 16, 46, 61
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 91
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 37, 197
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 8, 38, 67, 223
CviKI_1 RGCY 4 cut(s) 8, 38, 67, 223
DpnI GATC 3 cut(s) 18, 48, 63
DpnII GATC 3 cut(s) 16, 46, 61
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 197
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 119, 207
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 205
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 209
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 14, 71, 206
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 209
Kpn2I TCCGGA 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 16, 46, 61
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 10, 27, 110, 116
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 18, 48, 63
MboI GATC 3 cut(s) 16, 46, 61
MboII GAAGA 2 cut(s) 21, 163
MflI RGATCY 1 cut(s) 16
MnlI CCTC 1 cut(s) 89
MroI TCCGGA 1 cut(s) 13
MseI TTAA 1 cut(s) 226
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 14
NdeII GATC 3 cut(s) 16, 46, 61
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 18, 39, 199
NmuCI GTSAC 1 cut(s) 86
PagI TCATGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 7, 10
PspN4I GGNNCC 3 cut(s) 18, 39, 199
PspPI GGNCC 2 cut(s) 37, 197
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 8
SaqAI TTAA 1 cut(s) 226
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 3 cut(s) 16, 46, 61
Sau96I GGNCC 2 cut(s) 37, 197
SetI ASST 4 cut(s) 10, 69, 78, 152
SfaNI GCATC 1 cut(s) 111
SgeI CNNG 8 cut(s) 26, 37, 83, 119, 137, 143, 163, 218
SinI GGWCC 1 cut(s) 197
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 78
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 21, 145
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 197
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.