Rh3CG120500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
9718105 .. 9721224
3120 bp
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UTR
Exon/CDS
Intron
Rh3CG120500.1

Sequence Viewer

Length: 192 bp
ATGGCAGCTATTGCTCCGTTCTCGCCTTCCTTGGCTCCCAACAAGTCTGAAGACGATGAAGTTCTGATCCTCGGTGACCCGAAATTCGCTCTCAACGGTGAGCTTTTGTTGCTTTTTCTGGTCCTGCTGTTCGCCACCTTGTTCATCGTTCTCATAGTCTTTCTCTACGGAAGGAATCATCGTAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.0

Weight (kDa)

4.95

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022469)

Species Orthologous Gene IDs
prunus_persica Prupe.6G282100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462331
rosa_samantha Rh3CG120500 Rh3DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 69
AluBI AGCT 2 cut(s) 8, 103
AluI AGCT 2 cut(s) 8, 103
AlwI GGATC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 86, 110
AvaII GGWCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 17
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 30, 70
BseDI CCNNGG 2 cut(s) 30, 70
BseXI GCAGC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 30, 70
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 11
BstEII GGTNACC 1 cut(s) 74
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 11, 109
BstPI GGTNACC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 121
CviJI RGCY 3 cut(s) 8, 35, 103
CviKI_1 RGCY 3 cut(s) 8, 35, 103
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaiI YATR 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 175
HphI GGTGA 2 cut(s) 86, 110
Hpy188I TCNGA 2 cut(s) 49, 66
HpyAV CCTTC 2 cut(s) 36, 165
HpyCH4III ACNGT 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 109
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 19, 40
LpnPI CCDG 2 cut(s) 104, 137
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 62
MluCI AATT 1 cut(s) 83
MnlI CCTC 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 11, 109
NdeII GATC 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 7
PspEI GGTNACC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 121
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 121
SetI ASST 3 cut(s) 10, 105, 140
SgeI CNNG 8 cut(s) 34, 43, 55, 83, 91, 131, 136, 151
SinI GGWCC 1 cut(s) 121
Sse9I AATT 1 cut(s) 83
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 98
TasI AATT 1 cut(s) 83
TfiI GAWTC 1 cut(s) 175
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 72, 133
TspGWI ACGGA 2 cut(s) 6, 183
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.