RchiOBHm_Chr3g0462331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
10035467 .. 10035958
492 bp
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UTR
Exon/CDS
Intron
PRQ42871

Sequence Viewer

Length: 195 bp
ATGATGGCAGCTATTGCTCCGTTCTCGCCTTCCTTGGCTCCCAACAAGTCTGAAGACGATGAAGTTCTGATCCTCGGTGACCCGAAATTCGCTCTCAACGGTGAGCTTTTGTTGCTTTTTCTGGTCCTGCTGTTCGCCACCTTGTTCATCGTTCTCATAGTCTTTCTCTACGGAAGGAATCATCGTAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.13

Weight (kDa)

4.95

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022469)

Species Orthologous Gene IDs
prunus_persica Prupe.6G282100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0462331
rosa_samantha Rh3CG120500 Rh3DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 72
AluBI AGCT 2 cut(s) 11, 106
AluI AGCT 2 cut(s) 11, 106
AlwI GGATC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 89, 113
AvaII GGWCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 20
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 33, 73
BseDI CCNNGG 2 cut(s) 33, 73
BseXI GCAGC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 33, 73
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 14
BstEII GGTNACC 1 cut(s) 77
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 14, 112
BstPI GGTNACC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 124
CviJI RGCY 3 cut(s) 11, 38, 106
CviKI_1 RGCY 3 cut(s) 11, 38, 106
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaiI YATR 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 178
HphI GGTGA 2 cut(s) 89, 113
Hpy188I TCNGA 2 cut(s) 52, 69
HpyAV CCTTC 2 cut(s) 39, 168
HpyCH4III ACNGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 112
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 22, 43
LpnPI CCDG 2 cut(s) 107, 140
Lsp1109I GCAGC 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 1 cut(s) 65
MluCI AATT 1 cut(s) 86
MnlI CCTC 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 14, 112
NdeII GATC 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 124
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 124
SetI ASST 3 cut(s) 13, 108, 143
SgeI CNNG 8 cut(s) 37, 46, 58, 86, 94, 134, 139, 154
SinI GGWCC 1 cut(s) 124
Sse9I AATT 1 cut(s) 86
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 101
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 178
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 75, 136
TspGWI ACGGA 2 cut(s) 9, 186
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.