Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0019800

Physical Location & Seq

Genomic Coordinates Reverse (-)

27896051 .. 27897277

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTCTTCGCCCGAGCACAAGCACCGTGGTGCGCAAGAAATCGTACAAGACTGGAGTGGATGCGGACCAGGCTCGGAGGAGAAGCGAGGACAACTTAGTGGAGATCAGGAAGAACAAGCGCGAGGAAAATTTGCTCAAGAAGAGAAGCCAAGGCTTGCCTCCGTCCCAGCAGCAACTGCTTGATGGCACCCAAACCACCGTCGTTTTCCAGAATAGGTTGGAAAGTATTCCCTCAATGGTGCAAGGAGTATGGTCTGATGATCCTGCTTTGCAATTGGAGACTACCACTCAGTTTAGGAAGCTGTTATCAATTGAACGCAGCCCTCCAATTGACGAGGTTATAAAAGCAGGTGCGGTCCCTCGGTTTGTGGAGTTTCTTGGGAGACATGATATGCCCCAATTGCAATTTGAAGCTGCATGGGCTTTGACCAATGTTGCATCTGGAACATCAGATCATACACGAGTTGCTATTGAACATGGTGCGGTCCCCATGTTTGTGCAGCTTCTTAGCTCTGGCAGTGATGATGTCAGAGAGCAGGTTGTCTCTCACTACCTTTCACACTTTTCATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009605 GO:0009607 GO:0009608 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0030581 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046907 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051707 GO:0051708 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080034 GO:1902579 GO:1902581 GO:1902583

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

193

Amino Acids

21.54

Weight (kDa)

8.06

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019800)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G311300_v2.0.a1
pyrus_communis	pycom12g19170
rosa_chinensis	RchiOBHm_Chr4g0393711
rosa_samantha	Rh4AG049000 Rh4BG045100 Rh4BG363100 Rh4CG377400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AarI	CACCTGC	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	35
Acc36I	ACCTGC	2 cut(s)	341, 529
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	65, 356, 485
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	317, 413, 476
AjnI	CCWGG	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	304, 416, 505, 513
AluI	AGCT	4 cut(s)	304, 416, 505, 513
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	4 cut(s)	9, 275, 379, 550
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	13
ApeKI	GCWGC	4 cut(s)	172, 321, 416, 502
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	36, 123
AspS9I	GGNCC	3 cut(s)	67, 358, 487
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	3 cut(s)	67, 358, 487
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	184, 333, 403, 514
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	4 cut(s)	9, 275, 379, 550
BfuAI	ACCTGC	2 cut(s)	341, 529
BisI	GCNGC	4 cut(s)	173, 322, 417, 503
BlsI	GCNGC	4 cut(s)	174, 323, 418, 504
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	3 cut(s)	67, 358, 487
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	67, 358, 487
BmiI	GGNNCC	3 cut(s)	190, 360, 489
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	52, 449
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	27, 151, 362
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	27, 151, 362
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	184, 333, 403, 514
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	13
BslFI	GGGAC	3 cut(s)	151, 344, 473
BsmAI	GTCTC	4 cut(s)	9, 275, 379, 550
BsmFI	GGGAC	3 cut(s)	151, 344, 473
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	105, 262, 454
BspACI	CCGC	3 cut(s)	65, 356, 485
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	190, 360, 489
BspMI	ACCTGC	2 cut(s)	341, 529
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	27, 151, 362
BssMI	GATC	3 cut(s)	105, 262, 454
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	28, 202
Bst6I	CTCTTC	2 cut(s)	12, 137
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	97, 291, 509
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	36, 123
BstKTI	GATC	3 cut(s)	108, 265, 457
BstMAI	GTCTC	4 cut(s)	9, 275, 379, 550
BstMBI	GATC	3 cut(s)	105, 262, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 178, 403, 422
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	184, 333, 403, 514
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	2 cut(s)	341, 529
Cac8I	GCNNGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	2 cut(s)	36, 123
Cfr13I	GGNCC	3 cut(s)	67, 358, 487
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	389, 420, 479, 493
CviJI	RGCY	9 cut(s)	74, 150, 156, 304, 324, 416, 425, 505, 513
CviKI_1	RGCY	9 cut(s)	74, 150, 156, 304, 324, 416, 425, 505, 513
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	97, 291, 509
DpnI	GATC	3 cut(s)	107, 264, 456
DpnII	GATC	3 cut(s)	105, 262, 454
Eam1104I	CTCTTC	2 cut(s)	12, 137
EarI	CTCTTC	2 cut(s)	12, 137
Eco130I	CCWWGG	1 cut(s)	151
Eco47I	GGWCC	3 cut(s)	67, 358, 487
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	392, 423, 482, 496
FaiI	YATR	8 cut(s)	253, 344, 390, 395, 421, 459, 480, 494
FaqI	GGGAC	3 cut(s)	151, 344, 473
FatI	CATG	4 cut(s)	388, 419, 478, 492
Fnu4HI	GCNGC	4 cut(s)	173, 322, 417, 503
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	4 cut(s)	173, 322, 417, 503
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	2 cut(s)	35, 122
GluI	GCNGC	4 cut(s)	173, 322, 417, 503
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	36, 123
Hin1II	CATG	4 cut(s)	392, 423, 482, 496
Hin6I	GCGC	2 cut(s)	34, 121
HinP1I	GCGC	2 cut(s)	34, 121
Hpy188I	TCNGA	4 cut(s)	78, 259, 454, 533
Hpy188III	TCNNGA	4 cut(s)	109, 139, 211, 444
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	28, 202
HpyCH4V	TGCA	6 cut(s)	244, 274, 406, 419, 440, 502
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 178, 403, 422
HpyF3I	CTNAG	3 cut(s)	97, 291, 509
Hsp92II	CATG	4 cut(s)	392, 423, 482, 496
HspAI	GCGC	2 cut(s)	34, 121
Kzo9I	GATC	3 cut(s)	105, 262, 454
Lsp1109I	GCAGC	4 cut(s)	184, 333, 403, 514
LweI	GCATC	2 cut(s)	52, 449
MalI	GATC	3 cut(s)	107, 264, 456
MboI	GATC	3 cut(s)	105, 262, 454
MboII	GAAGA	2 cut(s)	124, 154
MfeI	CAATTG	4 cut(s)	275, 312, 330, 401
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	6 cut(s)	130, 275, 312, 330, 401, 407
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	72, 82, 118, 171, 244, 331, 336, 372
MroXI	GAANNNNTTC	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	29, 497
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	4 cut(s)	275, 312, 330, 401
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	71, 178, 403, 422
NdeII	GATC	3 cut(s)	105, 262, 454
NlaIII	CATG	4 cut(s)	392, 423, 482, 496
NlaIV	GGNNCC	3 cut(s)	190, 360, 489
NsbI	TGCGCA	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	29
PaqCI	CACCTGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	174, 323, 418, 504
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	190, 360, 489
PspPI	GGNCC	3 cut(s)	67, 358, 487
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	29, 497
SatI	GCNGC	4 cut(s)	173, 322, 417, 503
Sau3AI	GATC	3 cut(s)	105, 262, 454
Sau96I	GGNCC	3 cut(s)	67, 358, 487
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	9 cut(s)	221, 306, 342, 355, 418, 507, 515, 543, 558
SfaNI	GCATC	2 cut(s)	52, 449
SinI	GGWCC	3 cut(s)	67, 358, 487
SmiMI	CAYNNNNRTG	2 cut(s)	29, 497
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	6 cut(s)	130, 275, 312, 330, 401, 407
SsiI	CCGC	3 cut(s)	65, 356, 485
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	28, 202
TasI	AATT	6 cut(s)	130, 275, 312, 330, 401, 407
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	4 cut(s)	172, 321, 416, 502
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	3 cut(s)	67, 358, 487
XapI	RAATTY	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.