Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019800

Physical Location & Seq

Genomic Coordinates Forward (+)

21088504 .. 21090595

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAAGGAGTTTGGTCTAATGTTCCTGCACTGCAATTGGAGGCACTACTCAGTTTAGGAAGCTATCATCAATTGCACAGCCCTCCTACTGATGAGGTTATAAAAGCTGGTGCTGTCCCTTGGTTTGTTGAGTTTCTTGGAAGACATGATTTGCCCCAACTGCAGGTGAAGCCTGCCTTGCCAATTCTAAAACATCTCTTTTACTTGAATGATGAAGAAATCTTGACAGATGCTTGCTGGGTCCTATCCGATCTCTCGGATGGTTCGAATGAAAAAAATTCAACGCAGGTGTATGTTCACGACTTGTGGAGCGTTTGCTGTGATAAACCACAGTTCCATTCCGTTACTGAAACTGCAGCTAGGAAGTCCATATTGCAGAAGGACTTCTCATCAGATATGAAGTCTGGTTCTAGTTCCACAGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009605 GO:0009607 GO:0009608 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0030581 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046907 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051707 GO:0051708 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080034 GO:1902579 GO:1902581 GO:1902583

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

5.03

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019800)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G311300_v2.0.a1
pyrus_communis	pycom12g19170
rosa_chinensis	RchiOBHm_Chr4g0393711
rosa_samantha	Rh4AG049000 Rh4BG045100 Rh4BG363100 Rh4CG377400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AarI	CACCTGC	2 cut(s)	154, 277
Acc36I	ACCTGC	2 cut(s)	154, 277
AcsI	RAATTY	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	208, 282
AluBI	AGCT	3 cut(s)	63, 107, 359
AluI	AGCT	3 cut(s)	63, 107, 359
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	254
BfaI	CTAG	3 cut(s)	360, 411, 427
BfmI	CTRYAG	2 cut(s)	161, 354
BfuAI	ACCTGC	2 cut(s)	154, 277
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	2 cut(s)	165, 358
BspMI	ACCTGC	2 cut(s)	154, 277
BspT104I	TTCGAA	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	174, 235
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 169, 178
BstSFI	CTRYAG	2 cut(s)	161, 354
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	2 cut(s)	154, 277
Cac8I	GCNNGC	2 cut(s)	174, 235
Cfr13I	GGNCC	1 cut(s)	241
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	5 cut(s)	63, 81, 107, 172, 359
CviKI_1	RGCY	5 cut(s)	63, 81, 107, 172, 359
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	149
FaiI	YATR	5 cut(s)	101, 147, 294, 371, 398
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	3 cut(s)	360, 411, 427
GluI	GCNGC	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	250, 259, 394
Hpy188III	TCNNGA	2 cut(s)	223, 299
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	4, 29, 34, 76, 163, 356, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 169, 178
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	39, 93, 149, 186, 223, 272, 390
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	360, 411, 427
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	153, 227
MfeI	CAATTG	2 cut(s)	35, 71
MluCI	AATT	4 cut(s)	35, 71, 183, 277
MnlI	CCTC	3 cut(s)	34, 88, 93
MroXI	GAANNNNTTC	1 cut(s)	383
MunI	CAATTG	2 cut(s)	35, 71
MwoI	GCNNNNNNNGC	3 cut(s)	160, 169, 178
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	266
PaqCI	CACCTGC	2 cut(s)	154, 277
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PstI	CTGCAG	2 cut(s)	165, 358
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	241
SetI	ASST	6 cut(s)	65, 99, 109, 168, 291, 361
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	161, 354
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	4 cut(s)	35, 71, 183, 277
SspMI	CTAG	3 cut(s)	360, 411, 427
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	35, 71, 183, 277
TfiI	GAWTC	1 cut(s)	422
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	228, 285, 413
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	360, 411, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.