Rh4BG363100

importin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019800
Physical Location & Seq
Forward (+)
52150491 .. 52151100
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG363100.1

Sequence Viewer

Length: 210 bp
ATGGTTGCGGGGGTTCGTGCCACGGACGATGATTTACAGTTGAAGGCTGCGTCAAAATTTTGGGACCTGCTTGATGGAAACCCTCCTCCGATCGCTCAAGTGATTCAATCCGGGGTTGTTCCCAGATTCGTTGATTTTCTGCACAAGGAGGATTCTCCTCAGCTTCAGTTTGACTCGGGAATAATTGAGTCTTATCCGATATTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm Arm_3 IBB

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

4.33

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm PF00514 27 - 58 9.1e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019800)

Species Orthologous Gene IDs
prunus_persica Prupe.6G311300_v2.0.a1
pyrus_communis pycom12g19170
rosa_chinensis RchiOBHm_Chr4g0393711
rosa_samantha Rh4AG049000 Rh4BG045100 Rh4BG363100 Rh4CG377400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 43, 107
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 21, 111
BseDI CCNNGG 2 cut(s) 21, 111
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 75, 147
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 21, 111
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 39
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 47, 163
CviKI_1 RGCY 2 cut(s) 47, 163
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 64
FaeI CATG 1 cut(s) 210
FaiI YATR 1 cut(s) 208
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 210
HinfI GANTC 5 cut(s) 103, 126, 152, 173, 188
HpaII CCGG 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 90, 198
Hpy188III TCNNGA 2 cut(s) 177, 207
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 80, 124, 136
Lsp1109I GCAGC 1 cut(s) 34
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MluCI AATT 2 cut(s) 56, 183
MlyI GAGTC 2 cut(s) 167, 197
MnlI CCTC 4 cut(s) 93, 96, 142, 168
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 210
NlaIV GGNNCC 1 cut(s) 65
PagI TCATGA 1 cut(s) 206
PfeI GAWTC 3 cut(s) 103, 126, 152
PkrI GCNGC 1 cut(s) 49
Ple19I CGATCG 1 cut(s) 93
PleI GAGTC 2 cut(s) 167, 196
PpsI GAGTC 2 cut(s) 167, 196
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
PvuI CGATCG 1 cut(s) 93
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 2 cut(s) 167, 197
ScrFI CCNGG 1 cut(s) 112
SetI ASST 2 cut(s) 69, 165
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 56, 183
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 56, 183
TfiI GAWTC 3 cut(s) 103, 126, 152
TseI GCWGC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.