RchiOBHm_Chr4g0393711

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
9268547 .. 9269701
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36625

Sequence Viewer

Length: 216 bp
ATGATCCTGCTTTGCAATTGGAAGCAACTAGAAAGCTATTCTCAATTGGTGAAGGCTGCCTTACCAGTTCTTCAACAACTTAATTACTTGAATGATGAAGTAGTCTTGACAGATGCTTGCTGGGCGCTATCATATCTCGCAGATGGCCCAAATGACAAAATTCAGGTTGTGATTGAAGCAGGCGTCTGCCAACAACTTGTGGAGCTTCTGCTGTAA

Protein Analysis

71

Amino Acids

7.96

Weight (kDa)

4.07

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019800)

Species Orthologous Gene IDs
prunus_persica Prupe.6G311300_v2.0.a1
pyrus_communis pycom12g19170
rosa_chinensis RchiOBHm_Chr4g0393711
rosa_samantha Rh4AG049000 Rh4BG045100 Rh4BG363100 Rh4CG377400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 183
AgsI TTSAA 3 cut(s) 74, 91, 176
AluBI AGCT 2 cut(s) 36, 205
AluI AGCT 2 cut(s) 36, 205
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 118, 181
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 118, 181
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 172
CviJI RGCY 4 cut(s) 36, 56, 147, 205
CviKI_1 RGCY 4 cut(s) 36, 56, 147, 205
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaiI YATR 1 cut(s) 133
FalI AAGNNNNNCTT 2 cut(s) 44, 76
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 20, 78, 106, 149, 165
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 29
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 2 cut(s) 16, 44
MluCI AATT 4 cut(s) 16, 44, 82, 159
MseI TTAA 1 cut(s) 81
MunI CAATTG 2 cut(s) 16, 44
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 146
SetI ASST 3 cut(s) 38, 168, 207
SfaNI GCATC 1 cut(s) 103
Sse9I AATT 4 cut(s) 16, 44, 82, 159
SspMI CTAG 1 cut(s) 29
TasI AATT 4 cut(s) 16, 44, 82, 159
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 111
XapI RAATTY 1 cut(s) 159
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.