Prupe.7G083400_v2.0.a1

S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
11832476 .. 11833331
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G083400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 258 bp
ATGAAGGCATCCTTCACATTCTACCCTATCCTGCTATTTCTTCTTGTCTCAGTTGAATTTGGCACTTGCTCAGTGGTTCGTGGCGATGCACGCGCCGTGAGGATCCCGGAGCACTCGTGCCATAAGCTGATTGATCAATCAATCAGATGTGAGCTGCAGAATTGCATCAAGGAATGCTCCAAAGAACCATCTGGTGTTGGAGTGTGCAGAAGTAGAGTCTGTTTTTGCACATACTATTGTAAGGATCCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.61

Weight (kDa)

8.62

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21690
prunus_persica Prupe.7G083400_v2.0.a1 Prupe.7G095800_v2.0.a1
rosa_rugosa Rorug03G0169800
rosa_samantha Rh3BG253000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AclWI GGATC 4 cut(s) 97, 110, 239, 252
AcsI RAATTY 1 cut(s) 56
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 2 cut(s) 127, 154
AluI AGCT 2 cut(s) 127, 154
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 4 cut(s) 97, 110, 239, 252
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 107
BamHI GGATCC 2 cut(s) 102, 244
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 80
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 104, 246
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 17, 76, 174
BpuMI CCSGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 2 cut(s) 63, 84
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 102, 133, 244
BspCNI CTCAG 2 cut(s) 62, 83
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 104, 246
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 4 cut(s) 97, 110, 239, 252
BssMI GATC 3 cut(s) 102, 133, 244
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 49, 70
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 105, 136, 247
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 102, 133, 244
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 102, 244
BstYI RGATCY 2 cut(s) 102, 244
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 95
CviJI RGCY 2 cut(s) 127, 154
CviKI_1 RGCY 2 cut(s) 127, 154
DdeI CTNAG 2 cut(s) 49, 70
DpnI GATC 3 cut(s) 104, 135, 246
DpnII GATC 3 cut(s) 102, 133, 244
FaiI YATR 2 cut(s) 123, 232
FalI AAGNNNNNCTT 1 cut(s) 28
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 155
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 95
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 89, 157, 165, 207, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 49, 70
HspAI GCGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 102, 133, 244
LmnI GCTCC 2 cut(s) 109, 182
LpnPI CCDG 3 cut(s) 44, 120, 177
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 3 cut(s) 17, 76, 174
MalI GATC 3 cut(s) 104, 135, 246
MboI GATC 3 cut(s) 102, 133, 244
MboII GAAGA 1 cut(s) 32
MflI RGATCY 2 cut(s) 102, 244
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 2 cut(s) 56, 160
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 93, 258
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 179
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 107
NdeII GATC 3 cut(s) 102, 133, 244
NlaIV GGNNCC 2 cut(s) 104, 246
PctI GAATGC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 104, 246
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 2 cut(s) 102, 244
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 102, 133, 244
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 114
SetI ASST 2 cut(s) 129, 156
SfaNI GCATC 3 cut(s) 17, 76, 174
SfcI CTRYAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 56, 160
StyD4I CCNGG 1 cut(s) 105
TasI AATT 2 cut(s) 56, 160
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 78
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.