Prupe.7G090200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008618
Physical Location & Seq
Forward (+)
12371860 .. 12373518
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G090200.3

Sequence Viewer

Length: 597 bp
ATGTTCTTATTGGTACAAAATGTTCTTGACAGTGTGTTGATCCAAATTGAAACTTTTTTTATTCCAAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGATAACTCTATTGGAGTTGGGTTCATGGCTGTTGTTGCGGTATCTGGAAGCGTGGTTCTTCTTGCCCATCAAGTCCACAAGCGCCTTCTCTCAGATTTCATGAAGAACATTGAATGTGAAATGGGTGGTTTGCTTGATCACCACAAAAAAATGGCTTCTGGATCTGAGAAAATCCAAGGCAAGAAGTGTGTTAGATTTGCAGCGGATGTTGCGGAGCCATCATCAAACAACAAAGAGTACCGCAAGAGGCGCTTTGCACCAACAACAAAGCAGGCCAAAGAGGGAAATGGAAATTATAAAATGGACACCATGCCACTCAATAGGCAAGCTCTTTACAAAGGGATCATTGAATTTAAGTCCCTCAAGGGGCCACATGTTTTACAAACGATGAAGGGGGAGCTCAGAGAAAATACATATTTGGAATGGGAAAATACATCAAAGGATCACGTGGATTCACCTTACCTATATGGGGGGATAAACGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.64

Weight (kDa)

8.77

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AciI CCGC 4 cut(s) 149, 314, 323, 352
AclWI GGATC 4 cut(s) 34, 280, 461, 561
AcsI RAATTY 1 cut(s) 461
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 2 cut(s) 15, 350
AfiI CCNNNNNNNGG 2 cut(s) 477, 580
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 50, 224, 461
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 440, 511
AluI AGCT 2 cut(s) 440, 511
Alw21I GWGCWC 1 cut(s) 513
AlwI GGATC 4 cut(s) 34, 280, 461, 561
AoxI GGCC 2 cut(s) 384, 479
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 461
AspLEI GCGC 2 cut(s) 195, 363
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 242, 558
BanII GRGCYC 1 cut(s) 513
BbrPI CACGTG 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 323
BccI CCATC 3 cut(s) 103, 186, 337
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 595
BfoI RGCGCY 2 cut(s) 196, 364
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 327, 480
BpuEI CTTGAG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 580
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 477, 580
BseMII CTCAG 3 cut(s) 216, 267, 526
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 386, 481
BsiHKAI GWGCWC 1 cut(s) 513
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 477, 580
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 2 cut(s) 386, 481
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 5 cut(s) 39, 247, 272, 453, 553
BspACI CCGC 4 cut(s) 149, 314, 323, 352
BspANI GGCC 2 cut(s) 386, 481
BspCNI CTCAG 3 cut(s) 215, 268, 525
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 327, 480
BspPI GGATC 4 cut(s) 34, 280, 461, 561
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 5 cut(s) 39, 247, 272, 453, 553
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 384, 438
BstDEI CTNAG 3 cut(s) 202, 276, 512
BstF5I GGATG 1 cut(s) 322
BstH2I RGCGCY 2 cut(s) 196, 364
BstHHI GCGC 2 cut(s) 195, 363
BstKTI GATC 5 cut(s) 42, 250, 275, 456, 556
BstMBI GATC 5 cut(s) 39, 247, 272, 453, 553
BstMWI GCNNNNNNNGC 3 cut(s) 146, 320, 360
BstNSI RCATGY 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 2 cut(s) 386, 481
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 384, 438
CciI TCATGA 1 cut(s) 210
CfoI GCGC 2 cut(s) 195, 363
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 14, 349
CviAII CATG 4 cut(s) 136, 211, 421, 485
CviJI RGCY 7 cut(s) 140, 266, 328, 386, 440, 481, 511
CviKI_1 RGCY 7 cut(s) 140, 266, 328, 386, 440, 481, 511
CviQI GTAC 2 cut(s) 14, 349
DdeI CTNAG 3 cut(s) 202, 276, 512
DpnI GATC 5 cut(s) 41, 249, 274, 455, 555
DpnII GATC 5 cut(s) 39, 247, 272, 453, 553
Ecl136II GAGCTC 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 511
Eco72I CACGTG 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 4 cut(s) 139, 214, 424, 488
FaiI YATR 8 cut(s) 137, 212, 408, 422, 486, 526, 577, 579
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 135, 210, 420, 484
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 595
GlaI GCGC 2 cut(s) 194, 362
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 2 cut(s) 196, 364
HaeIII GGCC 2 cut(s) 386, 481
HhaI GCGC 2 cut(s) 195, 363
Hin1II CATG 4 cut(s) 139, 214, 424, 488
Hin6I GCGC 2 cut(s) 193, 361
HinP1I GCGC 2 cut(s) 193, 361
HinfI GANTC 1 cut(s) 563
HphI GGTGA 2 cut(s) 242, 558
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 205, 277, 515
Hpy188III TCNNGA 4 cut(s) 26, 156, 211, 270
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 206, 496
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 558, 591
HpyCH4V TGCA 2 cut(s) 311, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 320, 360
HpyF3I CTNAG 3 cut(s) 202, 276, 512
HpySE526I ACGT 2 cut(s) 558, 591
Hsp92II CATG 4 cut(s) 139, 214, 424, 488
HspAI GCGC 2 cut(s) 193, 361
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 5 cut(s) 39, 247, 272, 453, 553
LmnI GCTCC 2 cut(s) 325, 508
LpnPI CCDG 3 cut(s) 141, 255, 368
Lsp1109I GCAGC 1 cut(s) 323
MaeI CTAG 1 cut(s) 595
MaeII ACGT 2 cut(s) 558, 591
MalI GATC 5 cut(s) 41, 249, 274, 455, 555
MboI GATC 5 cut(s) 39, 247, 272, 453, 553
MboII GAAGA 2 cut(s) 161, 226
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 3 cut(s) 45, 403, 461
MnlI CCTC 4 cut(s) 70, 351, 385, 482
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 146, 320, 360
NdeII GATC 5 cut(s) 39, 247, 272, 453, 553
NlaIII CATG 4 cut(s) 139, 214, 424, 488
NlaIV GGNNCC 2 cut(s) 327, 480
NspI RCATGY 1 cut(s) 488
PagI TCATGA 1 cut(s) 210
PciI ACATGT 1 cut(s) 484
PfeI GAWTC 1 cut(s) 563
PkrI GCNGC 1 cut(s) 313
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 1 cut(s) 484
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 513
PspCI CACGTG 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 327, 480
PspPI GGNCC 1 cut(s) 479
PsrI GAACNNNNNNTAC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 15, 350
RsaNI GTAC 2 cut(s) 14, 349
SacI GAGCTC 1 cut(s) 513
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 5 cut(s) 39, 247, 272, 453, 553
Sau96I GGNCC 1 cut(s) 479
SduI GDGCHC 1 cut(s) 513
SetI ASST 6 cut(s) 442, 513, 561, 571, 576, 594
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 45, 403, 461
SsiI CCGC 4 cut(s) 149, 314, 323, 352
SspMI CTAG 1 cut(s) 595
SstI GAGCTC 1 cut(s) 513
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 2 cut(s) 561, 594
TasI AATT 3 cut(s) 45, 403, 461
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 124, 199, 227, 515
TspRI CASTG 1 cut(s) 37
XapI RAATTY 1 cut(s) 461
XceI RCATGY 1 cut(s) 488
XspI CTAG 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.