Rorug03G0159600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008618
Physical Location & Seq
Reverse (-)
13230835 .. 13235354
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0159600.1

Sequence Viewer

Length: 4164 bp
ATGAATACCCAACGGGCCCCAGTGGTCTTCACAAAACAGCCCTACATTGAACAAGAAGACCACCGGAGAATAGCCCAATGGGAATTCAACGTTCTCTCCCAGTCGGAGATCGCCAAAATGGCCGAGGCCCAAATCTTCGAAGGCAAGTACTACGATTCCGCCACCGGAAAACCCATCCAAGGCGGGTTGCTGGACCCCAGATTGGGCCCTGCGAATCGCCAGAGTGGCAACTGCGCCACTTGCTCTGCAAAACTCTCCGACTGCCCGGGGCACTTTGGGTATTTCATGCTTTCCCTCCCTGTTTTCAATGTCGGGTATTTGAATGTGGTTGTGGACATTTTGAAGTGCATCTGTAAAATGTGCTCTAGAATTCTTTTGGATGAGAAACTGAGAAGCAAGAACGAGTCGGTGAAGGACATGAAATCGATAGTGAAGGAGTGTGTTAAGCCCTTGACGAATCATAGAGCAGTGGAGTGCTCCCATTGTGGGTATACAAATGGCAATGTGAGAAGGGTTCCGGGGGATGTGGGAATTCAACACGATCATTCGGAACGAACTGTTAATGGTGTTGTGGTAGATGAGTATAAGTCGGCGATAATTGACAAGGGAGTCATTAATATGCAACAAATTTTTTTGCTTGACCCTGCTAGAGTTTATTCTCTGTTTAGGAAGATGCTTGATGTGGATTGCCGGTTTCTGTGTCTTAAAACTAGACCGGAGAATCTCCTGTTGACTTGCATTCTTGTGCCGCCGATAGCTATTCGGCCTTCGGTTCTTGTCGGTGGATCACAGAGTAATGAGGATGATGTGACTGTGAGGCTGAAGAGGATTATTCAAGCAAATGCGAAACTTCGACTGCAGCTATCATCTGCAGGAAGTTCCTCTGCTGTGTCATTGTCTTGTTGGGAGGAGCTTCAGATTGAGGTTGCACAGTATATAAATAGTGAGGCTCGTGTACACCTTCCGCCGAGCTTGAGAGCTCAACAACCTACCAAGCCATTGAGTGGTTTGGTGCAGCGCCTCAAAGGGAAGACGGGGCGGTTTCGTGGCACTTTGAGTGGGAAGCGTGTTGAATATACTGGGAGAAGTGTTATATCACCGGACCCTAATCTGAAAATTACCGAGGTTGGAATCCCTATGGAAATGGCTACAATTTTGAGTTATCCAGAACGTGTTTCCAAGCATAATATTGACAAGTTGAGGCTGTGTGTCAGTAATGGGCCTTATAAGTACCCAGGTGCCAAAATGTTGAGAAATCATGACGGCTCTGAGTTCACCTTGAAGGTTAACAGACAGGGCCGTGCTCTTGGACTCAAATTTGGTGACGTAGTTGATCGGCATTTAGAAGACGGGGACATTGTTCTTTTCAACAGGCAACCGAGCTTGCATCGGATGTCTGTCATGTGTCATAGGGCAAGGATTATGCCACATTCGAGGACATTGAGGTTTAATGAATCTGTTTGCAACCCGTATAATGCTGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAAACTGAGGAGGCTCGTGCTGAGGCGCTTATGTTGATGGGGGTGCATAATAATCTATGCACTCCGAAAAATGGAGAGATTTTGGTTGCTTCCACTCAAGATTTTCTAACTTCTTCTTTCCTTATAACAAGGAAGGACACGTTTTATGACCGTGCATCTTTTTCACTCCTGTGTTCATATATGGTTGATGGCAAGGCTTCTGTTGATTTGCCAACACCTGCTGTAGTTAAGCCAGTAGAGCTCTGGACAGGTAAGCAGCTATTTAATGTTTTAGTACGCCCAAACTCAAATGTGAGAGTCTATCTAAATCTTATTGTTAGGGAGAAATCCTACACCTCCGCCAGGACTGAGGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGTTTTGTCTATTTTCGCAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGCTACCCTAGGAAATGGCAATAAGGATGGACTTTACTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGCCTAGCCAAATTAAGTGCACGGTGGATTGGTAATCATGGATTCTCGATTGGGCTTAGTGATGTACAACCAAGTGACAATTTGTATGATGAGAAAGAAAAAATCATCAAGGAAGGTTATAGCAAATGTGACAGCCAGATAGAGTTGTATAATCAACGAAAGCTGGACTCACTTGAATCACTTGAGTCTGGGATTTCTGAGGTGTTAAATAAGATTAGAGATCAAACTGGAAAGCTGTGCATGCAAAAGCTACATTGGAGAAACAGTCCCTTGATCATGTCCCAGTGTGGCTCCAAGGGATCTGCTATCAATATTAGCCAGATGATTGCCTGTGTTGGTCAGCAATCTGTTGGTGGTCGCCGTGCACCTGATGGTTTCATAGATCGAAGCCTTCCACACTTCCCTAGGAATGCAAAAATGCCTGCAGCTAAAGGCTTTGTAGCTAATTCCTTTTATAGTGGCCTGACACCTACAGAGTTTTTCTTTCATACAATGGGAGGGCGAGAGGGACTTGTTGATACAGCAGTGAAAACTGCTGAAACTGGGTACATGTCACGTAGATTGTCAAAGGTTTTAGAAGATCTCGCCATCCACTATGATAAAACAGTTCGGGTTGCCAATGGAGGTATAGTTCAGTTCTGTTATGGGGATGACGGTATGGACCCTGCTATGATGGAAGGGAAAAGTGGAGCACCGATAGACTTATTTCGAATGTTTTTGAAAGCCAAGGCCACATGCCCTGCTGAAGAAACTGATAGCAGCCTGTCTCCTGAACAAGTGTCTGAAGTAGTGAGAAGCAGGCTTTCAGAACAAGATATGATTCCTGAAGATGGTTTGTCTATGTGTTTTAAAAGTTCTATAGAGAAATTCCTGGATGAATATGGAAAAACACAGAGAAAAACACAGGAGACTTTTTGGTTGAATCGAAGTTCTGGTTGGGGGGTGAAGTCTGCTATTCTGGAGAAGATTGTCAAAAATATATCTGGTGTCACTTCTAGACAGCTGGAGGTTTTTCTAGATACTTGTATATCTCGTTATCATTCAAAAAGAATTGATGCTGGAACGGCAATTGGAGCAATTGGAGCTCAAAGTATTGGCGAGCCTGTGACACAGATGACACTGAAAACCTTTCACTTTGCTGGAGTTGCAAGCATGAACGTTACACTTGGAGTCCCTCGGATAAAGGAGATAATAGATGGAGCAAAAAATATCAAGACACCCATCATCACTACAGTACTTGAGTGTGATAATAATGCGATGATTGCACGCATGGTGGCAGGTCGGATTGGGAGCACAAATTTAGGGCAGGTGGCTAAGAGTATAGGGATCCTAATGACTCCAAGACAGGCATGCATAGTCATCAAGCTTGATATGGTCATGATTCGAGATGCACAGTTGTCTATAGATGTTGATGTTGTGAAAGAATCAATTTTAAAAGTTCCGAGAATCAAACTGAAGCAAGAGAATATTCAAGTTCCAGATAACGAAACTTTGGAAGTGTATTCTCAGGACAAGGATAGACGCAGACTTTATTTTGAGCTCTACAGATTAAAGAGTATCCTCCCCAATGTTACAGTAAGGGGCATAACGACAGTTCAGCGTGTTGTCATTGATGAAAGTGATGTGAAAAAGGATAAAGAAGATGTTCAAGTTAAAGTTGCAGATGTTGTTGGTAAGAAGTACAGGTTGTTTGCTGAAGGCAAGGGACTTCTGGCAGTAATGAGCACTGAAGGAGTAGATGGTTGTAAAACCACAAGTAATGACATTATTGAAGTGCAGCAGACACTTGGGATTGAAGCTGCGAGAATTTCTATCATAGAGGAGATAAAGTATACTATGAAGCAACATGGAATGAACATAGATGATCGCCATATGATGCTTTTAGCGGATGCAATGACTTCCAGGGGTCAAGTTCTTGGAATGACGAGATTTGGCCTTCAAAAGATGGACAAAAGTGTTTTAATGGGTGCTTCATTTGAGCGAACAGATGATCATCTGTTTAATGCTTGTGTGAAGGGGGCAGTAGACAGAATTGAAGGAGTAAGTGAAAGCATAATCATGGGAATACCAATGCCGATAGGAACTGGAATGTTCAAAGTTAAACACACCCTCCCTACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1387

Amino Acids

154.25

Weight (kDa)

8.86

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb1_1 PF04997 22 - 352 1.7e-69 RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 354 - 520 4.5e-71 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 523 - 702 2.6e-37 RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 731 - 827 3.4e-28 RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 834 - 1333 1.2e-85 RNA polymerase Rpb1, domain 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1227, 1640
AarI CACCTGC 2 cut(s) 1741, 3337
AasI GACNNNNNNGTC 1 cut(s) 608
Acc36I ACCTGC 3 cut(s) 1741, 3308, 3337
AccB1I GGYRCC 1 cut(s) 1238
AccB7I CCANNNNNTGG 2 cut(s) 1004, 1901
AccI GTMKAC 3 cut(s) 491, 3872, 4065
AciI CCGC 7 cut(s) 159, 183, 749, 965, 1039, 1854, 3926
AclI AACGTT 2 cut(s) 90, 3198
AclWI GGATC 4 cut(s) 793, 2347, 3361, 3374
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 8 cut(s) 83, 369, 531, 627, 1316, 2906, 3337, 3846
AcuI CTGAAG 8 cut(s) 842, 899, 2805, 2844, 2886, 3515, 3756, 3789
AfaI GTAC 8 cut(s) 149, 957, 1232, 1791, 2106, 2588, 3276, 3722
AfiI CCNNNNNNNGG 9 cut(s) 179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
AflIII ACRYGT 3 cut(s) 1171, 1653, 2589
AjnI CCWGG 4 cut(s) 1234, 1856, 2910, 3941
AjuI GAANNNNNNNTTGG 2 cut(s) 2959, 2991
AleI CACNNNNGTG 1 cut(s) 1684
AloI GAACNNNNNNTCC 2 cut(s) 2655, 2687
Alw26I GTCTC 3 cut(s) 1998, 2811, 2942
Alw44I GTGCAC 2 cut(s) 2058, 2403
AlwI GGATC 4 cut(s) 793, 2347, 3361, 3374
Ama87I CYCGRG 1 cut(s) 265
ApaI GGGCCC 2 cut(s) 19, 209
ApaLI GTGCAC 2 cut(s) 2058, 2403
ApeKI GCWGC 9 cut(s) 859, 1015, 1771, 2021, 2024, 2465, 2799, 3817, 3839
ApoI RAATTY 8 cut(s) 83, 369, 531, 627, 1316, 2906, 3337, 3846
AseI ATTAAT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 3684
AspA2I CCTAGG 2 cut(s) 1960, 2444
AspLEI GCGC 3 cut(s) 236, 1020, 1543
AsuC2I CCSGG 3 cut(s) 266, 267, 519
AsuHPI GGTGA 6 cut(s) 421, 1089, 1267, 1334, 1502, 2995
AsuII TTCGAA 2 cut(s) 138, 2749
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 3 cut(s) 193, 1102, 2701
AvrII CCTAGG 2 cut(s) 1960, 2444
BaeGI GKGCMC 6 cut(s) 19, 209, 273, 1895, 2062, 2407
BaeI ACNNNNGTAYC 2 cut(s) 2550, 2583
BamHI GGATCC 1 cut(s) 3366
BanI GGYRCC 1 cut(s) 1238
BanII GRGCYC 6 cut(s) 19, 209, 982, 1758, 3127, 3582
BauI CACGAG 2 cut(s) 951, 1530
BbsI GAAGAC 4 cut(s) 19, 63, 1037, 1353
BbvCI CCTCAGC 1 cut(s) 1536
BbvI GCAGC 9 cut(s) 871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BceAI ACGGC 4 cut(s) 1279, 1284, 2385, 3120
BciT130I CCWGG 4 cut(s) 1236, 1858, 2912, 3943
BciVI GTATCC 1 cut(s) 3608
BclI TGATCA 2 cut(s) 2313, 4030
BcnI CCSGG 3 cut(s) 266, 267, 519
BcoDI GTCTC 3 cut(s) 1998, 2811, 2942
BfaI CTAG 8 cut(s) 366, 648, 711, 1961, 2045, 2445, 3036, 3056
BfmI CTRYAG 9 cut(s) 857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
BfoI RGCGCY 2 cut(s) 1021, 1544
BfuAI ACCTGC 3 cut(s) 1741, 3308, 3337
BfuI GTATCC 1 cut(s) 3608
BglI GCCNNNNNGGC 2 cut(s) 119, 225
BglII AGATCT 1 cut(s) 2620
BlnI CCTAGG 2 cut(s) 1960, 2444
BmcAI AGTACT 2 cut(s) 149, 3276
Bme1390I CCNGG 7 cut(s) 266, 267, 519, 1236, 1858, 2912, 3943
Bme18I GGWCC 3 cut(s) 193, 1102, 2701
BmeT110I CYCGRG 1 cut(s) 265
BmrFI CCNGG 7 cut(s) 266, 267, 519, 1236, 1858, 2912, 3943
BmrI ACTGGG 5 cut(s) 14, 94, 1089, 2317, 2592
BmsI GCATC 8 cut(s) 357, 663, 1396, 1679, 3085, 3418, 3906, 3919
BmuI ACTGGG 5 cut(s) 14, 94, 1089, 2317, 2592
BpiI GAAGAC 4 cut(s) 19, 63, 1037, 1353
BpmI CTGGAG 3 cut(s) 3020, 3065, 3201
Bpu10I CCTNAGC 1 cut(s) 1536
Bpu14I TTCGAA 2 cut(s) 138, 2749
BpuEI CTTGAG 4 cut(s) 994, 1596, 2243, 3299
BpuMI CCSGG 3 cut(s) 266, 267, 519
Bsa29I ATCGAT 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 2597
BsaBI GATNNNNATC 1 cut(s) 4032
BsaWI WCCGGW 4 cut(s) 63, 164, 715, 1099
Bsc4I CCNNNNNNNGG 9 cut(s) 179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
Bse118I RCCGGY 1 cut(s) 690
Bse1I ACTGG 8 cut(s) 20, 100, 1084, 1748, 2272, 2323, 2587, 4129
Bse3DI GCAATG 3 cut(s) 508, 1893, 3939
Bse8I GATNNNNATC 1 cut(s) 4032
BseBI CCWGG 4 cut(s) 1236, 1858, 2912, 3943
BseCI ATCGAT 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 4032
BseLI CCNNNNNNNGG 9 cut(s) 179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
BseMI GCAATG 3 cut(s) 508, 1893, 3939
BseMII CTCAG 8 cut(s) 380, 1260, 1512, 1527, 1854, 2014, 2229, 3560
BseNI ACTGG 8 cut(s) 20, 100, 1084, 1748, 2272, 2323, 2587, 4129
BseRI GAGGAG 3 cut(s) 923, 1538, 3875
BseSI GKGCMC 6 cut(s) 19, 209, 273, 1895, 2062, 2407
BseXI GCAGC 9 cut(s) 871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BsgI GTGCAG 2 cut(s) 1034, 3836
BshNI GGYRCC 1 cut(s) 1238
BshVI ATCGAT 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 7 cut(s) 64, 165, 266, 518, 691, 716, 1100
BslFI GGGAC 7 cut(s) 1367, 1496, 2292, 2305, 2562, 3197, 3759
BslI CCNNNNNNNGG 9 cut(s) 179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
BsmAI GTCTC 3 cut(s) 1998, 2811, 2942
BsmFI GGGAC 7 cut(s) 1367, 1496, 2292, 2305, 2562, 3197, 3759
BsmI GAATGC 2 cut(s) 738, 2455
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 2 cut(s) 138, 2749
Bsp120I GGGCCC 2 cut(s) 15, 205
Bsp1407I TGTACA 2 cut(s) 955, 2104
BspACI CCGC 7 cut(s) 159, 183, 749, 965, 1039, 1854, 3926
BspCNI CTCAG 8 cut(s) 381, 1261, 1513, 1528, 1855, 2013, 2230, 3559
BspDI ATCGAT 1 cut(s) 425
BspHI TCATGA 2 cut(s) 1258, 3417
BspMAI CTGCAG 3 cut(s) 861, 874, 2467
BspMI ACCTGC 3 cut(s) 1741, 3308, 3337
BspPI GGATC 4 cut(s) 793, 2347, 3361, 3374
BspT104I TTCGAA 2 cut(s) 138, 2749
BspT107I GGYRCC 1 cut(s) 1238
BsrDI GCAATG 3 cut(s) 508, 1893, 3939
BsrFI RCCGGY 1 cut(s) 690
BsrGI TGTACA 2 cut(s) 955, 2104
BsrI ACTGG 8 cut(s) 20, 100, 1084, 1748, 2272, 2323, 2587, 4129
BssAI RCCGGY 1 cut(s) 690
BssNAI GTATAC 2 cut(s) 492, 3873
BssSI CACGAG 2 cut(s) 951, 1530
BssT1I CCWWGG 5 cut(s) 178, 1960, 2334, 2444, 2766
Bst1107I GTATAC 2 cut(s) 492, 3873
Bst2BI CACGAG 2 cut(s) 951, 1530
Bst2UI CCWGG 4 cut(s) 1236, 1858, 2912, 3943
Bst6I CTCTTC 2 cut(s) 818, 1867
BstAUI TGTACA 2 cut(s) 955, 2104
BstBAI YACGTR 1 cut(s) 2597
BstBI TTCGAA 2 cut(s) 138, 2749
BstC8I GCNNGC 8 cut(s) 1385, 2282, 2463, 2840, 3140, 3190, 3307, 3391
BstENI CCTNNNNNAGG 1 cut(s) 1855
BstH2I RGCGCY 2 cut(s) 1021, 1544
BstHHI GCGC 3 cut(s) 236, 1020, 1543
BstMAI GTCTC 3 cut(s) 1998, 2811, 2942
BstNI CCWGG 4 cut(s) 1236, 1858, 2912, 3943
BstNSI RCATGY 4 cut(s) 2284, 2593, 2778, 3393
BstSCI CCNGG 7 cut(s) 264, 265, 517, 1234, 1856, 2910, 3941
BstSFI CTRYAG 9 cut(s) 857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
BstSLI GKGCMC 6 cut(s) 19, 209, 273, 1895, 2062, 2407
BstV1I GCAGC 9 cut(s) 871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BstV2I GAAGAC 4 cut(s) 19, 63, 1037, 1353
BstX2I RGATCY 3 cut(s) 2339, 2620, 3366
BstYI RGATCY 3 cut(s) 2339, 2620, 3366
BstZ17I GTATAC 2 cut(s) 492, 3873
Bsu15I ATCGAT 1 cut(s) 425
BsuI GTATCC 1 cut(s) 3608
BsuTUI ATCGAT 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 3311
BtsI GCAGTG 2 cut(s) 474, 2571
BtsIMutI CAGTG 7 cut(s) 27, 474, 1930, 2330, 2571, 3158, 3765
BveI ACCTGC 3 cut(s) 1741, 3308, 3337
Cac8I GCNNGC 8 cut(s) 1385, 2282, 2463, 2840, 3140, 3190, 3307, 3391
CciI TCATGA 2 cut(s) 1258, 3417
CfoI GCGC 3 cut(s) 236, 1020, 1543
Cfr10I RCCGGY 1 cut(s) 690
Cfr9I CCCGGG 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 1 cut(s) 3570
Csp6I GTAC 8 cut(s) 148, 956, 1231, 1790, 2105, 2587, 3275, 3721
CviQI GTAC 8 cut(s) 148, 956, 1231, 1790, 2105, 2587, 3275, 3721
DraI TTTAAA 2 cut(s) 2890, 3474
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 818, 1867
EarI CTCTTC 2 cut(s) 818, 1867
EciI GGCGGA 3 cut(s) 148, 954, 1843
Ecl136II GAGCTC 4 cut(s) 980, 1756, 3125, 3580
Eco130I CCWWGG 5 cut(s) 178, 1960, 2334, 2444, 2766
Eco24I GRGCYC 6 cut(s) 19, 209, 982, 1758, 3127, 3582
Eco47I GGWCC 3 cut(s) 193, 1102, 2701
Eco53kI GAGCTC 4 cut(s) 980, 1756, 3125, 3580
Eco57I CTGAAG 8 cut(s) 842, 899, 2805, 2844, 2886, 3515, 3756, 3789
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 4 cut(s) 980, 1756, 3125, 3580
EcoNI CCTNNNNNAGG 1 cut(s) 1855
EcoO109I RGGNCCY 2 cut(s) 16, 206
EcoRI GAATTC 3 cut(s) 83, 369, 531
EcoRII CCWGG 4 cut(s) 1234, 1856, 2910, 3941
EcoT14I CCWWGG 5 cut(s) 178, 1960, 2334, 2444, 2766
EcoT22I ATGCAT 1 cut(s) 3395
EcoT38I GRGCYC 6 cut(s) 19, 209, 982, 1758, 3127, 3582
ErhI CCWWGG 5 cut(s) 178, 1960, 2334, 2444, 2766
FaqI GGGAC 7 cut(s) 1367, 1496, 2292, 2305, 2562, 3197, 3759
FauI CCCGC 1 cut(s) 176
FauNDI CATATG 1 cut(s) 3912
FbaI TGATCA 2 cut(s) 2313, 4030
FblI GTMKAC 3 cut(s) 491, 3872, 4065
FriOI GRGCYC 6 cut(s) 19, 209, 982, 1758, 3127, 3582
FspBI CTAG 8 cut(s) 366, 648, 711, 1961, 2045, 2445, 3036, 3056
GlaI GCGC 3 cut(s) 235, 1019, 1542
GsuI CTGGAG 3 cut(s) 3020, 3065, 3201
HaeII RGCGCY 2 cut(s) 1021, 1544
HapII CCGG 7 cut(s) 64, 165, 266, 518, 691, 716, 1100
HgaI GACGC 1 cut(s) 3570
HhaI GCGC 3 cut(s) 236, 1020, 1543
Hin6I GCGC 3 cut(s) 234, 1018, 1541
HinP1I GCGC 3 cut(s) 234, 1018, 1541
HincII GTYRAC 2 cut(s) 732, 1288
HindII GTYRAC 2 cut(s) 732, 1288
HindIII AAGCTT 1 cut(s) 3404
HpaI GTTAAC 1 cut(s) 1288
HpaII CCGG 7 cut(s) 64, 165, 266, 518, 691, 716, 1100
HphI GGTGA 6 cut(s) 421, 1089, 1267, 1334, 1502, 2995
HpyCH4IV ACGT 6 cut(s) 90, 1171, 1326, 1655, 2596, 3198
HpySE526I ACGT 6 cut(s) 90, 1171, 1326, 1655, 2596, 3198
HspAI GCGC 3 cut(s) 234, 1018, 1541
Ksp22I TGATCA 2 cut(s) 2313, 4030
KspAI GTTAAC 1 cut(s) 1288
LmnI GCTCC 8 cut(s) 482, 910, 2336, 2729, 3113, 3122, 3239, 3330
Lsp1109I GCAGC 9 cut(s) 871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
LweI GCATC 8 cut(s) 357, 663, 1396, 1679, 3085, 3418, 3906, 3919
MaeI CTAG 8 cut(s) 366, 648, 711, 1961, 2045, 2445, 3036, 3056
MaeII ACGT 6 cut(s) 90, 1171, 1326, 1655, 2596, 3198
MaeIII GTNAC 9 cut(s) 808, 1322, 2114, 2168, 2592, 3028, 3145, 3199, 3610
MfeI CAATTG 2 cut(s) 3108, 3117
MflI RGATCY 3 cut(s) 2339, 2620, 3366
MlyI GAGTC 8 cut(s) 413, 618, 1305, 1821, 2201, 2234, 3219, 3370
MmeI TCCRAC 4 cut(s) 84, 282, 1108, 3302
Mph1103I ATGCAT 1 cut(s) 3395
MroXI GAANNNNTTC 1 cut(s) 3684
MslI CAYNNNNRTG 4 cut(s) 617, 743, 1684, 4097
MspA1I CMGCKG 1 cut(s) 3043
MspI CCGG 7 cut(s) 64, 165, 266, 518, 691, 716, 1100
MspR9I CCNGG 7 cut(s) 266, 267, 519, 1236, 1858, 2912, 3943
MunI CAATTG 2 cut(s) 3108, 3117
Mva1269I GAATGC 2 cut(s) 738, 2455
MvaI CCWGG 4 cut(s) 1236, 1858, 2912, 3943
NciI CCSGG 3 cut(s) 266, 267, 519
NdeI CATATG 1 cut(s) 3912
NmeAIII GCCGAG 2 cut(s) 148, 993
NmuCI GTSAC 7 cut(s) 808, 1322, 2114, 2168, 2592, 3028, 3145
NsiI ATGCAT 1 cut(s) 3395
NspI RCATGY 4 cut(s) 2284, 2593, 2778, 3393
NspV TTCGAA 2 cut(s) 138, 2749
OliI CACNNNNGTG 1 cut(s) 1684
PaeI GCATGC 2 cut(s) 2284, 3393
PagI TCATGA 2 cut(s) 1258, 3417
PaqCI CACCTGC 2 cut(s) 1741, 3337
PciI ACATGT 1 cut(s) 2589
PctI GAATGC 2 cut(s) 738, 2455
PdmI GAANNNNTTC 1 cut(s) 3684
PflMI CCANNNNNTGG 2 cut(s) 1004, 1901
PfoI TCCNGGA 1 cut(s) 2910
PleI GAGTC 8 cut(s) 412, 617, 1305, 1820, 2201, 2233, 3218, 3370
PpsI GAGTC 8 cut(s) 412, 617, 1305, 1820, 2201, 2233, 3218, 3370
Ppu21I YACGTR 1 cut(s) 2597
PscI ACATGT 1 cut(s) 2589
PshBI ATTAAT 1 cut(s) 615
PsiI TTATAA 2 cut(s) 1227, 1640
Psp124BI GAGCTC 4 cut(s) 982, 1758, 3127, 3582
Psp1406I AACGTT 2 cut(s) 90, 3198
Psp6I CCWGG 4 cut(s) 1234, 1856, 2910, 3941
PspGI CCWGG 4 cut(s) 1234, 1856, 2910, 3941
PspOMI GGGCCC 2 cut(s) 15, 205
PstI CTGCAG 3 cut(s) 861, 874, 2467
PsuI RGATCY 3 cut(s) 2339, 2620, 3366
PvuII CAGCTG 1 cut(s) 3043
RsaI GTAC 8 cut(s) 149, 957, 1232, 1791, 2106, 2588, 3276, 3722
RsaNI GTAC 8 cut(s) 148, 956, 1231, 1790, 2105, 2587, 3275, 3721
RseI CAYNNNNRTG 4 cut(s) 617, 743, 1684, 4097
SacI GAGCTC 4 cut(s) 982, 1758, 3127, 3582
ScaI AGTACT 2 cut(s) 149, 3276
SchI GAGTC 8 cut(s) 413, 618, 1305, 1821, 2201, 2234, 3219, 3370
ScrFI CCNGG 7 cut(s) 266, 267, 519, 1236, 1858, 2912, 3943
SfaNI GCATC 8 cut(s) 357, 663, 1396, 1679, 3085, 3418, 3906, 3919
SfcI CTRYAG 9 cut(s) 857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
SfuI TTCGAA 2 cut(s) 138, 2749
SinI GGWCC 3 cut(s) 193, 1102, 2701
SmaI CCCGGG 1 cut(s) 267
SmiMI CAYNNNNRTG 4 cut(s) 617, 743, 1684, 4097
SmlI CTYRAG 4 cut(s) 973, 1611, 2222, 3278
SmoI CTYRAG 4 cut(s) 973, 1611, 2222, 3278
SphI GCATGC 2 cut(s) 2284, 3393
SsiI CCGC 7 cut(s) 159, 183, 749, 965, 1039, 1854, 3926
SspI AATATT 4 cut(s) 1189, 1504, 2353, 3508
SspMI CTAG 8 cut(s) 366, 648, 711, 1961, 2045, 2445, 3036, 3056
SstI GAGCTC 4 cut(s) 982, 1758, 3127, 3582
StyD4I CCNGG 7 cut(s) 264, 265, 517, 1234, 1856, 2910, 3941
StyI CCWWGG 5 cut(s) 178, 1960, 2334, 2444, 2766
TaiI ACGT 6 cut(s) 93, 1174, 1329, 1658, 2599, 3201
TaqI TCGA 9 cut(s) 138, 425, 853, 1433, 2087, 2425, 2749, 2965, 3424
TatI WGTACW 5 cut(s) 147, 955, 2104, 3274, 3720
TauI GCSGC 1 cut(s) 751
TscAI CASTG 7 cut(s) 27, 474, 1930, 2330, 2571, 3165, 3772
TseFI GTSAC 7 cut(s) 808, 1322, 2114, 2168, 2592, 3028, 3145
TseI GCWGC 9 cut(s) 859, 1015, 1771, 2021, 2024, 2465, 2799, 3817, 3839
Tsp45I GTSAC 7 cut(s) 808, 1322, 2114, 2168, 2592, 3028, 3145
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 7 cut(s) 27, 474, 1930, 2330, 2571, 3165, 3772
Van91I CCANNNNNTGG 2 cut(s) 1004, 1901
VneI GTGCAC 2 cut(s) 2058, 2403
VpaK11BI GGWCC 3 cut(s) 193, 1102, 2701
VspI ATTAAT 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 1855
XapI RAATTY 8 cut(s) 83, 369, 531, 627, 1316, 2906, 3337, 3846
XbaI TCTAGA 3 cut(s) 365, 3035, 3055
XceI RCATGY 4 cut(s) 2284, 2593, 2778, 3393
XcmI CCANNNNNNNNNTGG 1 cut(s) 1755
XmaI CCCGGG 1 cut(s) 265
XmaJI CCTAGG 2 cut(s) 1960, 2444
XmiI GTMKAC 3 cut(s) 491, 3872, 4065
XmnI GAANNNNTTC 1 cut(s) 3684
XspI CTAG 8 cut(s) 366, 648, 711, 1961, 2045, 2445, 3036, 3056
ZrmI AGTACT 2 cut(s) 149, 3276
Zsp2I ATGCAT 1 cut(s) 3395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.