Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0020850

Physical Location & Seq

Genomic Coordinates Reverse (-)

9950300 .. 9952471

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTTAAGGCAAACAACAACTCTTGGCTTTTCCCAGAGCAGAATTCTGCTTGGCAACTGCCTAATTTGAATCATATGAGCATGTTGCTTGAGCCCAGGCAACAGGAATGTTTACCATCATCTACAAATCAGGGCATTTGCCCATTTTCTGGACATATGGCATTGCCAGGGTCCACAGTTTCCGGTGTTCAGGGTGTTATGGCGAAACAAACAAATGAAGGTCATGGGGTGCTTCAACATTTACCTCCATATTTTCAGACCTTATTTCCTCCACCAAATTCTTATCTTAATGAAAAGCAGTCAGCATTTTCTTATGGATTTGGTGGTCGCATGGCTGTGCCAAATGCAAATCCAGGGTCTTCCCAGAAGGGATTCTTCATTTTTGATCAGTCTGGGAATGAAACAAAGCTAATATATAATTCTGATTGCCCTCCTAGCCAGGATCCACCCTTTGCCAGTAAAAGGTTCGTTTATGGTTATGGTTCACATGAAGCAGGACTAACAACCAGCATGGACCAAATTGGTTCAACCGAGTACCTCTTGCATGAAGAGATCGGTGAGAATCACATAATTGAAGAGAGTGAGATGCATGAAGACACAGAAGAAATCAATGCATTGCTTTACTCTGATGATTATGATGATGAAGATAATAATGATGATGACGGAGACGATAATGACAGTGATTGTGGTGAGGATGATGAAGTAAAAAGCACGGGTCATTCTCCAATAGATCTTCAAGTGAGTTATGGAAAGAAAGAACATGTGGAGGAATTAACAGAGAAGGTCATCAGTTGTGATGCTTCAAACAAAAGGCATAAATTGCTCAATGGTGGTTACAGGCAATTATCACCAATGGAGACTGTTATTAATTCGATACAGCCGTATGGATCTCACGGGCACGGGAACAATATGGAATCGAGCTACGGACTTGGCCAGATCCAAGGAGAGGAAATACATTCTACTGTGGGTAAGATGAAGTCCAAAAAAGAAACAATTCGTGAGACAATTAGAGTTCTTGAGAGTGTGATTCCTGGTGCTAAGGGCAAGGATTCAGTGTTCATCATAGACAAAGCTATAGAATACTTGAAGTCTATGAAGCTTGCAGCCGAAACTCTGGGAGTGAGCTTCCATGAAGAAGCTGCGTTCCGTCCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009826 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0040007 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

42.57

Weight (kDa)

4.78

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09460 AT5G64340
malus_domestica	MD04G1047600.v1.1
prunus_persica	Prupe.8G067600_v2.0.a1
pyrus_communis	pycom04g04160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AclWI	GGATC	4 cut(s)	437, 450, 895, 931
AcoI	YGGCCR	1 cut(s)	931
AcsI	RAATTY	2 cut(s)	43, 277
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	149, 462, 946
AflIII	ACRYGT	1 cut(s)	760
AgsI	TTSAA	7 cut(s)	70, 236, 528, 575, 737, 804, 1087
AjnI	CCWGG	5 cut(s)	95, 166, 352, 438, 1030
AloI	GAACNNNNNNTCC	2 cut(s)	1040, 1072
AluBI	AGCT	6 cut(s)	409, 921, 1073, 1099, 1125, 1139
AluI	AGCT	6 cut(s)	409, 921, 1073, 1099, 1125, 1139
Alw26I	GTCTC	3 cut(s)	660, 851, 995
AlwI	GGATC	4 cut(s)	437, 450, 895, 931
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	2 cut(s)	1103, 1139
ApoI	RAATTY	2 cut(s)	43, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	2 cut(s)	371, 993
AspS9I	GGNCC	2 cut(s)	171, 514
AsuHPI	GGTGA	3 cut(s)	569, 701, 840
AvaII	GGWCC	2 cut(s)	171, 514
BaeGI	GKGCMC	1 cut(s)	900
BaeI	ACNNNNGTAYC	2 cut(s)	866, 899
BalI	TGGCCA	1 cut(s)	933
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	351, 600
BbvI	GCAGC	2 cut(s)	1115, 1126
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	865
BciT130I	CCWGG	5 cut(s)	97, 168, 354, 440, 1032
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	660, 851, 995
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	1074
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	2 cut(s)	1104, 1140
BlsI	GCNGC	2 cut(s)	1105, 1141
Bme1390I	CCNGG	5 cut(s)	97, 168, 354, 440, 1032
Bme18I	GGWCC	2 cut(s)	171, 514
BmgT120I	GGNCC	2 cut(s)	171, 514
BmiI	GGNNCC	2 cut(s)	172, 444
BmrFI	CCNGG	5 cut(s)	97, 168, 354, 440, 1032
BmsI	GCATC	2 cut(s)	576, 787
BpiI	GAAGAC	2 cut(s)	351, 600
Bpu10I	CCTNAGC	1 cut(s)	1038
BpuEI	CTTGAG	2 cut(s)	110, 1037
BsaJI	CCNNGG	4 cut(s)	95, 167, 353, 940
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 462, 946
Bse1I	ACTGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	161, 614
BseBI	CCWGG	5 cut(s)	97, 168, 354, 440, 1032
BseDI	CCNNGG	4 cut(s)	95, 167, 353, 940
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	3 cut(s)	149, 462, 946
BseMI	GCAATG	2 cut(s)	161, 614
BseNI	ACTGG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	900
BseXI	GCAGC	2 cut(s)	1115, 1126
BshFI	GGCC	1 cut(s)	933
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	149, 462, 946
BsmAI	GTCTC	3 cut(s)	660, 851, 995
BsmBI	CGTCTC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	933
Bsp1286I	GDGCHC	2 cut(s)	96, 900
Bsp143I	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
BspANI	GGCC	1 cut(s)	933
BspLI	GGNNCC	2 cut(s)	172, 444
BspPI	GGATC	4 cut(s)	437, 450, 895, 931
BsrDI	GCAATG	2 cut(s)	161, 614
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	4 cut(s)	95, 167, 353, 940
BssMI	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	5 cut(s)	97, 168, 354, 440, 1032
Bst4CI	ACNGT	4 cut(s)	178, 680, 862, 964
Bst6I	CTCTTC	2 cut(s)	543, 570
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	1101
BstDEI	CTNAG	1 cut(s)	1038
BstF5I	GGATG	1 cut(s)	700
BstKTI	GATC	6 cut(s)	388, 445, 555, 733, 890, 939
BstMAI	GTCTC	3 cut(s)	660, 851, 995
BstMBI	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 820
BstNI	CCWGG	5 cut(s)	97, 168, 354, 440, 1032
BstNSI	RCATGY	2 cut(s)	85, 764
BstSCI	CCNGG	5 cut(s)	95, 166, 352, 438, 1030
BstSFI	CTRYAG	1 cut(s)	1074
BstSLI	GKGCMC	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	1115, 1126
BstV2I	GAAGAC	2 cut(s)	351, 600
BstX2I	RGATCY	4 cut(s)	442, 730, 887, 936
BstYI	RGATCY	4 cut(s)	442, 730, 887, 936
BsuRI	GGCC	1 cut(s)	933
BtsCI	GGATG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	685, 1059
Cac8I	GCNNGC	1 cut(s)	1101
Cfr13I	GGNCC	2 cut(s)	171, 514
Csp6I	GTAC	1 cut(s)	535
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	1 cut(s)	1038
DpnI	GATC	6 cut(s)	387, 444, 554, 732, 889, 938
DpnII	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
EaeI	YGGCCR	1 cut(s)	931
Eam1104I	CTCTTC	2 cut(s)	543, 570
EarI	CTCTTC	2 cut(s)	543, 570
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	171, 514
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	5 cut(s)	95, 166, 352, 438, 1030
EcoT14I	CCWWGG	1 cut(s)	940
EcoT22I	ATGCAT	2 cut(s)	591, 616
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	660
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FauNDI	CATATG	2 cut(s)	75, 156
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	1104, 1140
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	1104, 1140
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	1104, 1140
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	70, 372, 562, 914, 1027, 1049
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	569, 701, 840
Hpy166II	GTNNAC	3 cut(s)	113, 174, 485
Hpy188I	TCNGA	3 cut(s)	258, 424, 628
Hpy188III	TCNNGA	3 cut(s)	150, 998, 1016
Hpy8I	GTNNAC	3 cut(s)	113, 174, 485
HpyAV	CCTTC	3 cut(s)	212, 361, 775
HpyCH4III	ACNGT	4 cut(s)	178, 680, 862, 964
HpyCH4V	TGCA	5 cut(s)	347, 544, 589, 614, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 820
HpyF3I	CTNAG	1 cut(s)	1038
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
Lsp1109I	GCAGC	2 cut(s)	1115, 1126
LweI	GCATC	2 cut(s)	576, 787
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	6 cut(s)	387, 444, 554, 732, 889, 938
MboI	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
MboII	GAAGA	9 cut(s)	351, 367, 560, 587, 605, 614, 656, 725, 1145
MflI	RGATCY	4 cut(s)	442, 730, 887, 936
MhlI	GDGCHC	2 cut(s)	96, 900
MlsI	TGGCCA	1 cut(s)	933
MluNI	TGGCCA	1 cut(s)	933
MnlI	CCTC	7 cut(s)	255, 279, 441, 548, 685, 760, 940
Mox20I	TGGCCA	1 cut(s)	933
Mph1103I	ATGCAT	2 cut(s)	591, 616
MroXI	GAANNNNTTC	2 cut(s)	371, 993
MscI	TGGCCA	1 cut(s)	933
MseI	TTAA	4 cut(s)	6, 288, 773, 867
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	933
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	5 cut(s)	97, 168, 354, 440, 1032
MvaI	CCWGG	5 cut(s)	97, 168, 354, 440, 1032
MwoI	GCNNNNNNNGC	2 cut(s)	435, 820
NdeI	CATATG	2 cut(s)	75, 156
NdeII	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
NlaIV	GGNNCC	2 cut(s)	172, 444
NsiI	ATGCAT	2 cut(s)	591, 616
NspI	RCATGY	2 cut(s)	85, 764
PciI	ACATGT	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	878
PdmI	GAANNNNTTC	2 cut(s)	371, 993
PfeI	GAWTC	6 cut(s)	70, 372, 562, 914, 1027, 1049
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	1105, 1141
PscI	ACATGT	1 cut(s)	760
PshBI	ATTAAT	1 cut(s)	867
Psp6I	CCWGG	5 cut(s)	95, 166, 352, 438, 1030
PspGI	CCWGG	5 cut(s)	95, 166, 352, 438, 1030
PspN4I	GGNNCC	2 cut(s)	172, 444
PspPI	GGNCC	2 cut(s)	171, 514
PsuI	RGATCY	4 cut(s)	442, 730, 887, 936
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	6, 288, 773, 867
SatI	GCNGC	2 cut(s)	1104, 1140
Sau3AI	GATC	6 cut(s)	385, 442, 552, 730, 887, 936
Sau96I	GGNCC	2 cut(s)	171, 514
ScrFI	CCNGG	5 cut(s)	97, 168, 354, 440, 1032
SduI	GDGCHC	2 cut(s)	96, 900
SfaNI	GCATC	2 cut(s)	576, 787
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	2 cut(s)	171, 514
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	89, 1016
SmoI	CTYRAG	2 cut(s)	89, 1016
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	95, 166, 352, 438, 1030
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	4 cut(s)	178, 680, 862, 964
TaqI	TCGA	2 cut(s)	872, 917
TfiI	GAWTC	6 cut(s)	70, 372, 562, 914, 1027, 1049
Tru1I	TTAA	4 cut(s)	6, 288, 773, 867
Tru9I	TTAA	4 cut(s)	6, 288, 773, 867
TscAI	CASTG	2 cut(s)	685, 1059
TseI	GCWGC	2 cut(s)	1103, 1139
TspGWI	ACGGA	3 cut(s)	678, 939, 1136
TspRI	CASTG	2 cut(s)	685, 1059
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	171, 514
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	2 cut(s)	43, 277
XceI	RCATGY	2 cut(s)	85, 764
XmnI	GAANNNNTTC	2 cut(s)	371, 993
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	2 cut(s)	591, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.