Prupe.8G141500_v2.0.a1

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014563
Physical Location & Seq
Reverse (-)
15914184 .. 15916632
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G141500.1

Sequence Viewer

Length: 285 bp
ATGGCAAAGAAAGCTGGCTCTGGCTCTTCTTCTCCTAAGGCAAAGACATGCTGCGATCACCTGGCTCTTCTGTCCTCTGATTTCACCCGCATTCCCAAATCTGATACTCCATGCATGAGATGCCAGGACGTCAAGGAGAGTTGGGTTTGTTTGTCCTGCAAGGACGTCTTCTGTAGTCGATACGTGAACATGCACTTCGTTGAGCACTATTTGCAGACAAACCATTGTCTTACTGCCAGCTGCAGAGATCAAAGAATTTGGTGTTATCGCTGCGAAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

8.52

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14825
fragaria_vesca FvH4_2g04060
malus_domestica MD05G1097100.v1.1
prunus_persica Prupe.8G141500_v2.0.a1 Prupe.8G141700_v2.0.a1
pyrus_communis pycom05g09570 pycom10g08890
rosa_chinensis RchiOBHm_Chr6g0253281 RchiOBHm_Chr6g0253411
rosa_laevigata RLG00000015021
rosa_multiflora Rmu_sc0001257.1_g000027 Rmu_sc0005439.1_g000006
rosa_roxburghii Rroxscaffold_7G00211920
rosa_rugosa Rorug05G0543800
rosa_samantha Rh6DG046900
rosa_wichuraiana Rw0G000060 Rw6G005300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 132, 168
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 255
AcyI GRCGYC 2 cut(s) 129, 165
AjnI CCWGG 2 cut(s) 60, 123
AluBI AGCT 2 cut(s) 14, 240
AluI AGCT 2 cut(s) 14, 240
Alw21I GWGCWC 1 cut(s) 207
ApeKI GCWGC 3 cut(s) 51, 240, 270
ApoI RAATTY 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 50, 76
AxyI CCTNAGG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 38, 227, 257
BciT130I CCWGG 2 cut(s) 62, 125
BfmI CTRYAG 2 cut(s) 172, 241
BisI GCNGC 3 cut(s) 52, 241, 271
BlsI GCNGC 3 cut(s) 53, 242, 272
Bme1390I CCNGG 2 cut(s) 62, 125
BmrFI CCNGG 2 cut(s) 62, 125
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 184
BsaHI GRCGYC 2 cut(s) 129, 165
Bse21I CCTNAGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 62, 125
BseXI GCAGC 3 cut(s) 38, 227, 257
BsiHKAI GWGCWC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 55, 247
BspACI CCGC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 245
BspQI GCTCTTC 2 cut(s) 31, 72
BssMI GATC 2 cut(s) 55, 247
BssNI GRCGYC 2 cut(s) 129, 165
Bst2UI CCWGG 2 cut(s) 62, 125
Bst6I CTCTTC 2 cut(s) 31, 72
BstACI GRCGYC 2 cut(s) 129, 165
BstAPI GCANNNNNTGC 2 cut(s) 120, 211
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 16, 238
BstDEI CTNAG 1 cut(s) 36
BstKTI GATC 2 cut(s) 58, 250
BstMBI GATC 2 cut(s) 55, 247
BstMWI GCNNNNNNNGC 3 cut(s) 11, 120, 211
BstNI CCWGG 2 cut(s) 62, 125
BstNSI RCATGY 2 cut(s) 51, 193
BstSCI CCNGG 2 cut(s) 60, 123
BstSFI CTRYAG 2 cut(s) 172, 241
BstV1I GCAGC 3 cut(s) 38, 227, 257
BstV2I GAAGAC 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 16, 238
CviAII CATG 4 cut(s) 48, 111, 115, 190
CviJI RGCY 5 cut(s) 14, 18, 24, 65, 240
CviKI_1 RGCY 5 cut(s) 14, 18, 24, 65, 240
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 57, 249
DpnII GATC 2 cut(s) 55, 247
Eam1104I CTCTTC 2 cut(s) 31, 72
EarI CTCTTC 2 cut(s) 31, 72
Eco81I CCTNAGG 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 60, 123
EcoT22I ATGCAT 1 cut(s) 116
FaeI CATG 4 cut(s) 51, 114, 118, 193
FaiI YATR 4 cut(s) 49, 112, 116, 191
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 4 cut(s) 47, 110, 114, 189
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 52, 241, 271
Fsp4HI GCNGC 3 cut(s) 52, 241, 271
GluI GCNGC 3 cut(s) 52, 241, 271
Hin1I GRCGYC 2 cut(s) 129, 165
Hin1II CATG 4 cut(s) 51, 114, 118, 193
HphI GGTGA 2 cut(s) 50, 76
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 79, 103
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4IV ACGT 3 cut(s) 129, 165, 183
HpyCH4V TGCA 5 cut(s) 114, 159, 193, 214, 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 120, 211
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 3 cut(s) 129, 165, 183
Hsp92I GRCGYC 2 cut(s) 129, 165
Hsp92II CATG 4 cut(s) 51, 114, 118, 193
Kzo9I GATC 2 cut(s) 55, 247
LguI GCTCTTC 2 cut(s) 31, 72
LpnPI CCDG 7 cut(s) 6, 47, 74, 110, 137, 169, 250
Lsp1109I GCAGC 3 cut(s) 38, 227, 257
LweI GCATC 1 cut(s) 110
MaeII ACGT 3 cut(s) 129, 165, 183
MalI GATC 2 cut(s) 57, 249
MboI GATC 2 cut(s) 55, 247
MboII GAAGA 4 cut(s) 18, 21, 59, 160
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 255
MnlI CCTC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 62, 125
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 2 cut(s) 62, 125
MwoI GCNNNNNNNGC 3 cut(s) 11, 120, 211
NdeII GATC 2 cut(s) 55, 247
NlaIII CATG 4 cut(s) 51, 114, 118, 193
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 2 cut(s) 51, 193
PciSI GCTCTTC 2 cut(s) 31, 72
PctI GAATGC 1 cut(s) 90
PkrI GCNGC 3 cut(s) 53, 242, 272
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 60, 123
PspGI CCWGG 2 cut(s) 60, 123
PstI CTGCAG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 240
SapI GCTCTTC 2 cut(s) 31, 72
SatI GCNGC 3 cut(s) 52, 241, 271
Sau3AI GATC 2 cut(s) 55, 247
ScrFI CCNGG 2 cut(s) 62, 125
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 16, 63, 132, 168, 186, 242
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 2 cut(s) 172, 241
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 60, 123
TaiI ACGT 3 cut(s) 132, 168, 186
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 255
TseI GCWGC 3 cut(s) 51, 240, 270
XapI RAATTY 1 cut(s) 255
XceI RCATGY 2 cut(s) 51, 193
ZraI GACGTC 2 cut(s) 130, 166
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.