histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G14825 |
| fragaria_vesca | FvH4_2g04060 |
| malus_domestica | MD05G1097100.v1.1 |
| prunus_persica | Prupe.8G141500_v2.0.a1 Prupe.8G141700_v2.0.a1 |
| pyrus_communis | pycom05g09570 pycom10g08890 |
| rosa_chinensis | RchiOBHm_Chr6g0253281 RchiOBHm_Chr6g0253411 |
| rosa_laevigata | RLG00000015021 |
| rosa_multiflora | Rmu_sc0001257.1_g000027 Rmu_sc0005439.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00211920 |
| rosa_rugosa | Rorug05G0543800 |
| rosa_samantha | Rh6DG046900 |
| rosa_wichuraiana | Rw0G000060 Rw6G005300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 129 |
| AatII | GACGTC | 1 cut(s) | 228 |
| Acc36I | ACCTGC | 1 cut(s) | 129 |
| AccIII | TCCGGA | 1 cut(s) | 423 |
| AciI | CCGC | 4 cut(s) | 38, 98, 156, 370 |
| AcsI | RAATTY | 1 cut(s) | 401 |
| AcuI | CTGAAG | 1 cut(s) | 245 |
| AcyI | GRCGYC | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 423 |
| AgsI | TTSAA | 1 cut(s) | 53 |
| AluBI | AGCT | 3 cut(s) | 14, 80, 300 |
| AluI | AGCT | 3 cut(s) | 14, 80, 300 |
| Aor13HI | TCCGGA | 1 cut(s) | 423 |
| AoxI | GGCC | 2 cut(s) | 99, 411 |
| ApeKI | GCWGC | 3 cut(s) | 5, 29, 234 |
| ApoI | RAATTY | 1 cut(s) | 401 |
| AspS9I | GGNCC | 2 cut(s) | 100, 412 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| BbvI | GCAGC | 3 cut(s) | 16, 17, 246 |
| BceAI | ACGGC | 1 cut(s) | 222 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 93, 127, 223, 257 |
| BfmI | CTRYAG | 1 cut(s) | 301 |
| BfuAI | ACCTGC | 1 cut(s) | 129 |
| BisI | GCNGC | 4 cut(s) | 6, 30, 99, 235 |
| BlsI | GCNGC | 4 cut(s) | 7, 31, 100, 236 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 412 |
| BmiI | GGNNCC | 2 cut(s) | 42, 414 |
| BmsI | GCATC | 3 cut(s) | 170, 325, 337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 1 cut(s) | 336 |
| BsaHI | GRCGYC | 1 cut(s) | 225 |
| BsaWI | WCCGGW | 1 cut(s) | 423 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 423 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseAI | TCCGGA | 1 cut(s) | 423 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 423 |
| BseMII | CTCAG | 2 cut(s) | 47, 310 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BseXI | GCAGC | 3 cut(s) | 16, 17, 246 |
| BsgI | GTGCAG | 1 cut(s) | 253 |
| BshFI | GGCC | 2 cut(s) | 101, 413 |
| BsiSI | CCGG | 1 cut(s) | 424 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 423 |
| BsnI | GGCC | 2 cut(s) | 101, 413 |
| Bsp13I | TCCGGA | 1 cut(s) | 423 |
| Bsp143I | GATC | 3 cut(s) | 115, 139, 307 |
| BspACI | CCGC | 4 cut(s) | 38, 98, 156, 370 |
| BspANI | GGCC | 2 cut(s) | 101, 413 |
| BspCNI | CTCAG | 2 cut(s) | 46, 309 |
| BspEI | TCCGGA | 1 cut(s) | 423 |
| BspLI | GGNNCC | 2 cut(s) | 42, 414 |
| BspMI | ACCTGC | 1 cut(s) | 129 |
| BspQI | GCTCTTC | 1 cut(s) | 25 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssMI | GATC | 3 cut(s) | 115, 139, 307 |
| BssNI | GRCGYC | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 2 cut(s) | 305, 430 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 57 |
| BstACI | GRCGYC | 1 cut(s) | 225 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 180 |
| BstC8I | GCNNGC | 2 cut(s) | 16, 185 |
| BstDEI | CTNAG | 2 cut(s) | 33, 296 |
| BstKTI | GATC | 3 cut(s) | 118, 142, 310 |
| BstMBI | GATC | 3 cut(s) | 115, 139, 307 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 35, 180, 271 |
| BstNSI | RCATGY | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 1 cut(s) | 301 |
| BstV1I | GCAGC | 3 cut(s) | 16, 17, 246 |
| BsuRI | GGCC | 2 cut(s) | 101, 413 |
| BtgZI | GCGATG | 1 cut(s) | 348 |
| BtsIMutI | CAGTG | 2 cut(s) | 135, 310 |
| BveI | ACCTGC | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 2 cut(s) | 16, 185 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 124, 159 |
| CviAII | CATG | 1 cut(s) | 256 |
| CviJI | RGCY | 8 cut(s) | 8, 14, 18, 80, 101, 237, 300, 413 |
| CviKI_1 | RGCY | 8 cut(s) | 8, 14, 18, 80, 101, 237, 300, 413 |
| DdeI | CTNAG | 2 cut(s) | 33, 296 |
| DpnI | GATC | 3 cut(s) | 117, 141, 309 |
| DpnII | GATC | 3 cut(s) | 115, 139, 307 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 57 |
| EarI | CTCTTC | 2 cut(s) | 25, 57 |
| EciI | GGCGGA | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 1 cut(s) | 412 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| FaeI | CATG | 1 cut(s) | 259 |
| FaiI | YATR | 6 cut(s) | 208, 257, 340, 379, 381, 395 |
| FatI | CATG | 1 cut(s) | 255 |
| FauI | CCCGC | 2 cut(s) | 163, 363 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 30, 99, 235 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 30, 99, 235 |
| GluI | GCNGC | 4 cut(s) | 6, 30, 99, 235 |
| HaeIII | GGCC | 2 cut(s) | 101, 413 |
| HapII | CCGG | 1 cut(s) | 424 |
| Hin1I | GRCGYC | 1 cut(s) | 225 |
| Hin1II | CATG | 1 cut(s) | 259 |
| HinfI | GANTC | 1 cut(s) | 83 |
| HpaII | CCGG | 1 cut(s) | 424 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 2 cut(s) | 135, 247 |
| Hpy188III | TCNNGA | 2 cut(s) | 244, 424 |
| Hpy8I | GTNNAC | 2 cut(s) | 135, 247 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| HpyCH4III | ACNGT | 2 cut(s) | 305, 430 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 3 cut(s) | 174, 234, 338 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 35, 180, 271 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 296 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92I | GRCGYC | 1 cut(s) | 225 |
| Hsp92II | CATG | 1 cut(s) | 259 |
| Kpn2I | TCCGGA | 1 cut(s) | 423 |
| Kzo9I | GATC | 3 cut(s) | 115, 139, 307 |
| LguI | GCTCTTC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LpnPI | CCDG | 9 cut(s) | 20, 134, 143, 174, 184, 187, 197, 242, 343 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 17, 246 |
| LweI | GCATC | 3 cut(s) | 170, 325, 337 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MalI | GATC | 3 cut(s) | 117, 141, 309 |
| MboI | GATC | 3 cut(s) | 115, 139, 307 |
| MboII | GAAGA | 4 cut(s) | 12, 15, 71, 74 |
| MluCI | AATT | 1 cut(s) | 401 |
| MnlI | CCTC | 1 cut(s) | 403 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroI | TCCGGA | 1 cut(s) | 423 |
| MseI | TTAA | 1 cut(s) | 433 |
| MslI | CAYNNNNRTG | 1 cut(s) | 192 |
| MspI | CCGG | 1 cut(s) | 424 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 35, 180, 271 |
| NdeII | GATC | 3 cut(s) | 115, 139, 307 |
| NlaIII | CATG | 1 cut(s) | 259 |
| NlaIV | GGNNCC | 2 cut(s) | 42, 414 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 259 |
| PaqCI | CACCTGC | 1 cut(s) | 129 |
| PciSI | GCTCTTC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 4 cut(s) | 7, 31, 100, 236 |
| PspN4I | GGNNCC | 2 cut(s) | 42, 414 |
| PspPI | GGNCC | 2 cut(s) | 100, 412 |
| RseI | CAYNNNNRTG | 1 cut(s) | 192 |
| SapI | GCTCTTC | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 433 |
| SatI | GCNGC | 4 cut(s) | 6, 30, 99, 235 |
| Sau3AI | GATC | 3 cut(s) | 115, 139, 307 |
| Sau96I | GGNCC | 2 cut(s) | 100, 412 |
| SetI | ASST | 5 cut(s) | 16, 82, 123, 228, 302 |
| SfaNI | GCATC | 3 cut(s) | 170, 325, 337 |
| SfcI | CTRYAG | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 192 |
| SmlI | CTYRAG | 1 cut(s) | 351 |
| SmoI | CTYRAG | 1 cut(s) | 351 |
| Sse9I | AATT | 1 cut(s) | 401 |
| SsiI | CCGC | 4 cut(s) | 38, 98, 156, 370 |
| TaaI | ACNGT | 2 cut(s) | 305, 430 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TasI | AATT | 1 cut(s) | 401 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| Tru1I | TTAA | 1 cut(s) | 433 |
| Tru9I | TTAA | 1 cut(s) | 433 |
| TscAI | CASTG | 2 cut(s) | 142, 310 |
| TseI | GCWGC | 3 cut(s) | 5, 29, 234 |
| TspDTI | ATGAA | 1 cut(s) | 396 |
| TspRI | CASTG | 2 cut(s) | 142, 310 |
| XapI | RAATTY | 1 cut(s) | 401 |
| XceI | RCATGY | 1 cut(s) | 259 |
| ZraI | GACGTC | 1 cut(s) | 226 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |