histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G14825 |
| fragaria_vesca | FvH4_2g04060 |
| malus_domestica | MD05G1097100.v1.1 |
| prunus_persica | Prupe.8G141500_v2.0.a1 Prupe.8G141700_v2.0.a1 |
| pyrus_communis | pycom05g09570 pycom10g08890 |
| rosa_chinensis | RchiOBHm_Chr6g0253281 RchiOBHm_Chr6g0253411 |
| rosa_laevigata | RLG00000015021 |
| rosa_multiflora | Rmu_sc0001257.1_g000027 Rmu_sc0005439.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00211920 |
| rosa_rugosa | Rorug05G0543800 |
| rosa_samantha | Rh6DG046900 |
| rosa_wichuraiana | Rw0G000060 Rw6G005300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 141 |
| Acc36I | ACCTGC | 2 cut(s) | 141, 414 |
| AciI | CCGC | 2 cut(s) | 115, 382 |
| AclWI | GGATC | 1 cut(s) | 364 |
| AcuI | CTGAAG | 1 cut(s) | 431 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AleI | CACNNNNGTG | 1 cut(s) | 204 |
| AluBI | AGCT | 2 cut(s) | 92, 312 |
| AluI | AGCT | 2 cut(s) | 92, 312 |
| AlwI | GGATC | 1 cut(s) | 364 |
| AoxI | GGCC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 3 cut(s) | 246, 271, 274 |
| AsuHPI | GGTGA | 2 cut(s) | 122, 431 |
| AxyI | CCTNAGG | 1 cut(s) | 45 |
| BbsI | GAAGAC | 1 cut(s) | 72 |
| BbvI | GCAGC | 3 cut(s) | 258, 258, 286 |
| BceAI | ACGGC | 1 cut(s) | 234 |
| BfmI | CTRYAG | 3 cut(s) | 244, 272, 313 |
| BfuAI | ACCTGC | 2 cut(s) | 141, 414 |
| BisI | GCNGC | 4 cut(s) | 247, 272, 275, 383 |
| BlsI | GCNGC | 4 cut(s) | 248, 273, 276, 384 |
| BmsI | GCATC | 4 cut(s) | 100, 182, 337, 349 |
| BpiI | GAAGAC | 1 cut(s) | 72 |
| BsaWI | WCCGGW | 1 cut(s) | 98 |
| Bse1I | ACTGG | 1 cut(s) | 218 |
| Bse21I | CCTNAGG | 1 cut(s) | 45 |
| BseGI | GGATG | 1 cut(s) | 119 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseNI | ACTGG | 1 cut(s) | 218 |
| BseRI | GAGGAG | 6 cut(s) | 21, 24, 27, 30, 33, 136 |
| BseXI | GCAGC | 3 cut(s) | 258, 258, 286 |
| BshFI | GGCC | 1 cut(s) | 385 |
| BsiSI | CCGG | 1 cut(s) | 99 |
| BsnI | GGCC | 1 cut(s) | 385 |
| Bsp143I | GATC | 4 cut(s) | 127, 151, 319, 369 |
| BspACI | CCGC | 2 cut(s) | 115, 382 |
| BspANI | GGCC | 1 cut(s) | 385 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspMAI | CTGCAG | 2 cut(s) | 248, 276 |
| BspMI | ACCTGC | 2 cut(s) | 141, 414 |
| BspPI | GGATC | 1 cut(s) | 364 |
| BspQI | GCTCTTC | 1 cut(s) | 25 |
| BsrI | ACTGG | 1 cut(s) | 218 |
| BssMI | GATC | 4 cut(s) | 127, 151, 319, 369 |
| Bst4CI | ACNGT | 2 cut(s) | 14, 317 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 31 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 123, 192, 271 |
| BstC8I | GCNNGC | 2 cut(s) | 115, 197 |
| BstDEI | CTNAG | 3 cut(s) | 45, 73, 308 |
| BstF5I | GGATG | 1 cut(s) | 119 |
| BstKTI | GATC | 4 cut(s) | 130, 154, 322, 372 |
| BstMBI | GATC | 4 cut(s) | 127, 151, 319, 369 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 123, 192, 271, 283 |
| BstSFI | CTRYAG | 3 cut(s) | 244, 272, 313 |
| BstV1I | GCAGC | 3 cut(s) | 258, 258, 286 |
| BstV2I | GAAGAC | 1 cut(s) | 72 |
| Bsu36I | CCTNAGG | 1 cut(s) | 45 |
| BsuRI | GGCC | 1 cut(s) | 385 |
| BtgZI | GCGATG | 1 cut(s) | 360 |
| BtsCI | GGATG | 1 cut(s) | 119 |
| BtsI | GCAGTG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 2 cut(s) | 181, 322 |
| BveI | ACCTGC | 2 cut(s) | 141, 414 |
| Cac8I | GCNNGC | 2 cut(s) | 115, 197 |
| CviJI | RGCY | 6 cut(s) | 18, 92, 249, 312, 385, 425 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 92, 249, 312, 385, 425 |
| DdeI | CTNAG | 3 cut(s) | 45, 73, 308 |
| DpnI | GATC | 4 cut(s) | 129, 153, 321, 371 |
| DpnII | GATC | 4 cut(s) | 127, 151, 319, 369 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 31 |
| EarI | CTCTTC | 2 cut(s) | 25, 31 |
| Eco57I | CTGAAG | 1 cut(s) | 431 |
| Eco81I | CCTNAGG | 1 cut(s) | 45 |
| EcoT22I | ATGCAT | 1 cut(s) | 352 |
| FaiI | YATR | 9 cut(s) | 85, 87, 220, 267, 269, 352, 391, 393, 403 |
| FauI | CCCGC | 1 cut(s) | 122 |
| FauNDI | CATATG | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 4 cut(s) | 247, 272, 275, 383 |
| FokI | GGATG | 1 cut(s) | 106 |
| Fsp4HI | GCNGC | 4 cut(s) | 247, 272, 275, 383 |
| GluI | GCNGC | 4 cut(s) | 247, 272, 275, 383 |
| HaeIII | GGCC | 1 cut(s) | 385 |
| HapII | CCGG | 1 cut(s) | 99 |
| HinfI | GANTC | 1 cut(s) | 95 |
| HpaII | CCGG | 1 cut(s) | 99 |
| HphI | GGTGA | 2 cut(s) | 122, 431 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 259 |
| Hpy188I | TCNGA | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 1 cut(s) | 47 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 259 |
| HpyAV | CCTTC | 1 cut(s) | 147 |
| HpyCH4III | ACNGT | 2 cut(s) | 14, 317 |
| HpyCH4V | TGCA | 5 cut(s) | 186, 246, 274, 350, 401 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 123, 192, 271, 283 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 73, 308 |
| Kzo9I | GATC | 4 cut(s) | 127, 151, 319, 369 |
| LguI | GCTCTTC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| Lsp1109I | GCAGC | 3 cut(s) | 258, 258, 286 |
| LweI | GCATC | 4 cut(s) | 100, 182, 337, 349 |
| MalI | GATC | 4 cut(s) | 129, 153, 321, 371 |
| MboI | GATC | 4 cut(s) | 127, 151, 319, 369 |
| MboII | GAAGA | 3 cut(s) | 12, 18, 77 |
| MfeI | CAATTG | 2 cut(s) | 57, 365 |
| MluCI | AATT | 3 cut(s) | 57, 365, 469 |
| MnlI | CCTC | 9 cut(s) | 34, 42, 45, 48, 51, 54, 157, 251, 438 |
| Mph1103I | ATGCAT | 1 cut(s) | 352 |
| MseI | TTAA | 1 cut(s) | 444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 204 |
| MspI | CCGG | 1 cut(s) | 99 |
| MunI | CAATTG | 2 cut(s) | 57, 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 123, 192, 271, 283 |
| NdeI | CATATG | 1 cut(s) | 267 |
| NdeII | GATC | 4 cut(s) | 127, 151, 319, 369 |
| NsiI | ATGCAT | 1 cut(s) | 352 |
| OliI | CACNNNNGTG | 1 cut(s) | 204 |
| PaqCI | CACCTGC | 1 cut(s) | 141 |
| PciSI | GCTCTTC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 95 |
| PkrI | GCNGC | 4 cut(s) | 248, 273, 276, 384 |
| PstI | CTGCAG | 2 cut(s) | 248, 276 |
| RseI | CAYNNNNRTG | 1 cut(s) | 204 |
| SapI | GCTCTTC | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 444 |
| SatI | GCNGC | 4 cut(s) | 247, 272, 275, 383 |
| Sau3AI | GATC | 4 cut(s) | 127, 151, 319, 369 |
| SetI | ASST | 4 cut(s) | 94, 135, 314, 408 |
| SfaNI | GCATC | 4 cut(s) | 100, 182, 337, 349 |
| SfcI | CTRYAG | 3 cut(s) | 244, 272, 313 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 204 |
| Sse9I | AATT | 3 cut(s) | 57, 365, 469 |
| SsiI | CCGC | 2 cut(s) | 115, 382 |
| TaaI | ACNGT | 2 cut(s) | 14, 317 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 3 cut(s) | 57, 365, 469 |
| TauI | GCSGC | 1 cut(s) | 385 |
| TfiI | GAWTC | 1 cut(s) | 95 |
| Tru1I | TTAA | 1 cut(s) | 444 |
| Tru9I | TTAA | 1 cut(s) | 444 |
| TscAI | CASTG | 2 cut(s) | 188, 322 |
| TseI | GCWGC | 3 cut(s) | 246, 271, 274 |
| TspDTI | ATGAA | 1 cut(s) | 408 |
| TspGWI | ACGGA | 1 cut(s) | 425 |
| TspRI | CASTG | 2 cut(s) | 188, 322 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 210 |
| Zsp2I | ATGCAT | 1 cut(s) | 352 |