histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G14825 |
| fragaria_vesca | FvH4_2g04060 |
| malus_domestica | MD05G1097100.v1.1 |
| prunus_persica | Prupe.8G141500_v2.0.a1 Prupe.8G141700_v2.0.a1 |
| pyrus_communis | pycom05g09570 pycom10g08890 |
| rosa_chinensis | RchiOBHm_Chr6g0253281 RchiOBHm_Chr6g0253411 |
| rosa_laevigata | RLG00000015021 |
| rosa_multiflora | Rmu_sc0001257.1_g000027 Rmu_sc0005439.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00211920 |
| rosa_rugosa | Rorug05G0543800 |
| rosa_samantha | Rh6DG046900 |
| rosa_wichuraiana | Rw0G000060 Rw6G005300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 311, 632, 1274 |
| AccBSI | CCGCTC | 3 cut(s) | 271, 1234, 1555 |
| AccI | GTMKAC | 1 cut(s) | 375 |
| AcoI | YGGCCR | 4 cut(s) | 232, 553, 874, 1516 |
| AcsI | RAATTY | 4 cut(s) | 398, 719, 1040, 1361 |
| AcuI | CTGAAG | 5 cut(s) | 242, 563, 884, 1205, 1526 |
| AfaI | GTAC | 1 cut(s) | 1031 |
| AjiI | CACGTC | 1 cut(s) | 883 |
| Alw21I | GWGCWC | 1 cut(s) | 31 |
| ApeKI | GCWGC | 2 cut(s) | 5, 1194 |
| ApoI | RAATTY | 4 cut(s) | 398, 719, 1040, 1361 |
| AspLEI | GCGC | 4 cut(s) | 534, 855, 1176, 1497 |
| AspS9I | GGNCC | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| AsuHPI | GGTGA | 5 cut(s) | 107, 428, 749, 1070, 1391 |
| AvaII | GGWCC | 1 cut(s) | 37 |
| Bbv12I | GWGCWC | 1 cut(s) | 31 |
| BbvI | GCAGC | 2 cut(s) | 17, 1206 |
| BccI | CCATC | 1 cut(s) | 962 |
| BceAI | ACGGC | 1 cut(s) | 861 |
| BclI | TGATCA | 1 cut(s) | 1317 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfmI | CTRYAG | 6 cut(s) | 298, 619, 940, 1192, 1261, 1582 |
| BlpI | GCTNAGC | 5 cut(s) | 348, 669, 990, 1311, 1632 |
| Bme18I | GGWCC | 1 cut(s) | 37 |
| BmgBI | CACGTC | 1 cut(s) | 883 |
| BmgT120I | GGNCC | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| BmiI | GGNNCC | 5 cut(s) | 39, 411, 732, 1053, 1374 |
| BmrI | ACTGGG | 1 cut(s) | 1146 |
| BmuI | ACTGGG | 1 cut(s) | 1146 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 348, 669, 990, 1311, 1632 |
| Bsa29I | ATCGAT | 1 cut(s) | 1641 |
| BsaAI | YACGTR | 4 cut(s) | 241, 562, 1029, 1204 |
| Bse1I | ACTGG | 5 cut(s) | 203, 524, 1152, 1166, 1487 |
| BseCI | ATCGAT | 1 cut(s) | 1641 |
| BseGI | GGATG | 5 cut(s) | 390, 711, 1032, 1353, 1676 |
| BseNI | ACTGG | 5 cut(s) | 203, 524, 1152, 1166, 1487 |
| BseX3I | CGGCCG | 3 cut(s) | 232, 553, 1516 |
| BseXI | GCAGC | 2 cut(s) | 17, 1206 |
| Bsh1285I | CGRYCG | 3 cut(s) | 235, 556, 1519 |
| BshVI | ATCGAT | 1 cut(s) | 1641 |
| BsiEI | CGRYCG | 3 cut(s) | 235, 556, 1519 |
| BsiHKAI | GWGCWC | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 1 cut(s) | 31 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 348, 669, 990, 1311, 1632 |
| BspDI | ATCGAT | 1 cut(s) | 1641 |
| BspLI | GGNNCC | 5 cut(s) | 39, 411, 732, 1053, 1374 |
| BspMAI | CTGCAG | 1 cut(s) | 1196 |
| BsrBI | CCGCTC | 3 cut(s) | 271, 1234, 1555 |
| BsrI | ACTGG | 5 cut(s) | 203, 524, 1152, 1166, 1487 |
| BssNAI | GTATAC | 1 cut(s) | 376 |
| Bst1107I | GTATAC | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 1 cut(s) | 215 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 177, 498, 819, 1140, 1461 |
| BstBAI | YACGTR | 4 cut(s) | 241, 562, 1029, 1204 |
| BstF5I | GGATG | 5 cut(s) | 390, 711, 1032, 1353, 1676 |
| BstHHI | GCGC | 4 cut(s) | 534, 855, 1176, 1497 |
| BstMCI | CGRYCG | 3 cut(s) | 235, 556, 1519 |
| BstNSI | RCATGY | 5 cut(s) | 256, 577, 898, 1219, 1540 |
| BstSFI | CTRYAG | 6 cut(s) | 298, 619, 940, 1192, 1261, 1582 |
| BstSNI | TACGTA | 1 cut(s) | 1029 |
| BstV1I | GCAGC | 2 cut(s) | 17, 1206 |
| BstZ17I | GTATAC | 1 cut(s) | 376 |
| BstZI | CGGCCG | 3 cut(s) | 232, 553, 1516 |
| Bsu15I | ATCGAT | 1 cut(s) | 1641 |
| BsuTUI | ATCGAT | 1 cut(s) | 1641 |
| BtrI | CACGTC | 1 cut(s) | 883 |
| BtsCI | GGATG | 5 cut(s) | 390, 711, 1032, 1353, 1676 |
| BtsI | GCAGTG | 1 cut(s) | 483 |
| BtsIMutI | CAGTG | 2 cut(s) | 211, 483 |
| CciNI | GCGGCCGC | 3 cut(s) | 232, 553, 1516 |
| CfoI | GCGC | 4 cut(s) | 534, 855, 1176, 1497 |
| Cfr13I | GGNCC | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| ClaI | ATCGAT | 1 cut(s) | 1641 |
| Csp6I | GTAC | 1 cut(s) | 1030 |
| CviQI | GTAC | 1 cut(s) | 1030 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 311, 632, 1274 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 311, 632, 1274 |
| EaeI | YGGCCR | 4 cut(s) | 232, 553, 874, 1516 |
| EagI | CGGCCG | 3 cut(s) | 232, 553, 1516 |
| EclXI | CGGCCG | 3 cut(s) | 232, 553, 1516 |
| Eco105I | TACGTA | 1 cut(s) | 1029 |
| Eco47I | GGWCC | 1 cut(s) | 37 |
| Eco52I | CGGCCG | 3 cut(s) | 232, 553, 1516 |
| Eco57I | CTGAAG | 5 cut(s) | 242, 563, 884, 1205, 1526 |
| EcoO109I | RGGNCCY | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| EcoT22I | ATGCAT | 2 cut(s) | 337, 979 |
| FbaI | TGATCA | 1 cut(s) | 1317 |
| FblI | GTMKAC | 1 cut(s) | 375 |
| FokI | GGATG | 5 cut(s) | 377, 698, 1019, 1340, 1663 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 4 cut(s) | 533, 854, 1175, 1496 |
| HhaI | GCGC | 4 cut(s) | 534, 855, 1176, 1497 |
| Hin6I | GCGC | 4 cut(s) | 532, 853, 1174, 1495 |
| HinP1I | GCGC | 4 cut(s) | 532, 853, 1174, 1495 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HphI | GGTGA | 5 cut(s) | 107, 428, 749, 1070, 1391 |
| Hpy166II | GTNNAC | 6 cut(s) | 244, 376, 565, 886, 1207, 1528 |
| Hpy188I | TCNGA | 4 cut(s) | 457, 778, 1099, 1420 |
| Hpy8I | GTNNAC | 6 cut(s) | 244, 376, 565, 886, 1207, 1528 |
| HpyCH4III | ACNGT | 1 cut(s) | 215 |
| HpyCH4IV | ACGT | 5 cut(s) | 240, 561, 882, 1028, 1203 |
| HpySE526I | ACGT | 5 cut(s) | 240, 561, 882, 1028, 1203 |
| HspAI | GCGC | 4 cut(s) | 532, 853, 1174, 1495 |
| Ksp22I | TGATCA | 1 cut(s) | 1317 |
| LmnI | GCTCC | 1 cut(s) | 74 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 1206 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 5 cut(s) | 240, 561, 882, 1028, 1203 |
| MaeIII | GTNAC | 7 cut(s) | 302, 623, 878, 944, 1021, 1265, 1586 |
| MbiI | CCGCTC | 3 cut(s) | 271, 1234, 1555 |
| MboII | GAAGA | 1 cut(s) | 71 |
| MhlI | GDGCHC | 1 cut(s) | 31 |
| MluCI | AATT | 6 cut(s) | 62, 398, 719, 838, 1040, 1361 |
| Mph1103I | ATGCAT | 2 cut(s) | 337, 979 |
| MspA1I | CMGCKG | 6 cut(s) | 592, 673, 913, 994, 1315, 1636 |
| NlaIV | GGNNCC | 5 cut(s) | 39, 411, 732, 1053, 1374 |
| NmuCI | GTSAC | 6 cut(s) | 302, 623, 878, 944, 1265, 1586 |
| NotI | GCGGCCGC | 3 cut(s) | 232, 553, 1516 |
| NsiI | ATGCAT | 2 cut(s) | 337, 979 |
| NspI | RCATGY | 5 cut(s) | 256, 577, 898, 1219, 1540 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| Ppu21I | YACGTR | 4 cut(s) | 241, 562, 1029, 1204 |
| PpuMI | RGGWCCY | 1 cut(s) | 37 |
| Psp5II | RGGWCCY | 1 cut(s) | 37 |
| PspN4I | GGNNCC | 5 cut(s) | 39, 411, 732, 1053, 1374 |
| PspPI | GGNCC | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| PspPPI | RGGWCCY | 1 cut(s) | 37 |
| PstI | CTGCAG | 1 cut(s) | 1196 |
| PvuII | CAGCTG | 4 cut(s) | 673, 994, 1315, 1636 |
| RsaI | GTAC | 1 cut(s) | 1031 |
| RsaNI | GTAC | 1 cut(s) | 1030 |
| Sau96I | GGNCC | 5 cut(s) | 37, 409, 730, 1051, 1372 |
| SduI | GDGCHC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 6 cut(s) | 298, 619, 940, 1192, 1261, 1582 |
| SinI | GGWCC | 1 cut(s) | 37 |
| SnaBI | TACGTA | 1 cut(s) | 1029 |
| Sse9I | AATT | 6 cut(s) | 62, 398, 719, 838, 1040, 1361 |
| SspMI | CTAG | 1 cut(s) | 47 |
| TaaI | ACNGT | 1 cut(s) | 215 |
| TaiI | ACGT | 5 cut(s) | 243, 564, 885, 1031, 1206 |
| TaqI | TCGA | 3 cut(s) | 93, 141, 1641 |
| TasI | AATT | 6 cut(s) | 62, 398, 719, 838, 1040, 1361 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| TscAI | CASTG | 2 cut(s) | 218, 490 |
| TseFI | GTSAC | 6 cut(s) | 302, 623, 878, 944, 1265, 1586 |
| TseI | GCWGC | 2 cut(s) | 5, 1194 |
| Tsp45I | GTSAC | 6 cut(s) | 302, 623, 878, 944, 1265, 1586 |
| TspDTI | ATGAA | 4 cut(s) | 714, 1356, 1608, 1679 |
| TspGWI | ACGGA | 2 cut(s) | 301, 1585 |
| TspRI | CASTG | 2 cut(s) | 218, 490 |
| VpaK11BI | GGWCC | 1 cut(s) | 37 |
| XapI | RAATTY | 4 cut(s) | 398, 719, 1040, 1361 |
| XbaI | TCTAGA | 1 cut(s) | 46 |
| XceI | RCATGY | 5 cut(s) | 256, 577, 898, 1219, 1540 |
| XmiI | GTMKAC | 1 cut(s) | 375 |
| XspI | CTAG | 1 cut(s) | 47 |
| Zsp2I | ATGCAT | 2 cut(s) | 337, 979 |