Prupe.8G171200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
17537004 .. 17537394
391 bp
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UTR
Exon/CDS
Intron
Prupe.8G171200.1

Sequence Viewer

Length: 216 bp
ATGGCTGAACCAAGGCCCAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATAGACGCGCCTCGGTTGAAACCTCATAAGCTGCGTCATTGCCCCAAGCGCAAAGATACTTCAATCATTGGCTTCCGCTCACTTTTATCCCACTACAGCAACTCAGCCTTTTCTGCTCTATATCCATTTGCTTCTCACTCACCCTTATTACGTGAGCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.06

Weight (kDa)

10.65

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022456)

Species Orthologous Gene IDs
prunus_persica Prupe.8G171200_v2.0.a1 Prupe.8G171500_v2.0.a1
pyrus_communis pycom01g15660
rosa_roxburghii Rroxscaffold_1G00012460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 23, 24
AgsI TTSAA 3 cut(s) 44, 70, 114
AluBI AGCT 2 cut(s) 82, 208
AluI AGCT 2 cut(s) 82, 208
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 2 cut(s) 61, 102
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 183
BbvI GCAGC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 11, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 24
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 11, 62
BseLI CCNNNNNNNGG 2 cut(s) 23, 24
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 23, 24
BsnI GGCC 1 cut(s) 16
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 11, 62
BssT1I CCWWGG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 2 cut(s) 61, 102
BstMWI GCNNNNNNNGC 3 cut(s) 56, 99, 164
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 16
CfoI GCGC 2 cut(s) 61, 102
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 2 cut(s) 65, 74
CviJI RGCY 6 cut(s) 5, 16, 82, 123, 158, 208
CviKI_1 RGCY 6 cut(s) 5, 16, 82, 123, 158, 208
DdeI CTNAG 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaiI YATR 2 cut(s) 78, 172
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
GlaI GCGC 2 cut(s) 60, 101
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 16
HgaI GACGC 2 cut(s) 65, 74
HhaI GCGC 2 cut(s) 61, 102
Hin6I GCGC 2 cut(s) 59, 100
HinP1I GCGC 2 cut(s) 59, 100
HphI GGTGA 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 99, 164
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 2 cut(s) 59, 100
LpnPI CCDG 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 69
MaeII ACGT 1 cut(s) 202
MbiI CCGCTC 1 cut(s) 129
MnlI CCTC 3 cut(s) 15, 72, 84
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 56, 99, 164
PkrI GCNGC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 203
PspPI GGNCC 1 cut(s) 15
SatI GCNGC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 15
SetI ASST 4 cut(s) 76, 84, 205, 210
SfcI CTRYAG 1 cut(s) 145
SgeI CNNG 6 cut(s) 24, 31, 59, 70, 75, 109
SsiI CCGC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 205
TseI GCWGC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.