pycom01g15660
ERF Family

mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0022456
Physical Location & Seq
Forward (+)
15448929 .. 15449867
939 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15660.1

Sequence Viewer

Length: 255 bp
ATGGGAGCTGAGGCAGAGAAGAAGAACGAATACTCTTCTGATCGTTTGAGGAAAAGGAAGAACCCTCATCACGAGGATGCGATTTTAGAAGGCACGGCTTTACCCCGAAGGGAGCCCTTCCAGAAATTCTCAAAGGCCAAGGCTGAACCCAGGCCAATGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATAGACGCGCCTCGGTTAGAACCTCATAAGCTGCGTCATTGCCCCAAGCGCAAAGATGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

85

Amino Acids

9.72

Weight (kDa)

10.07

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022456)

Species Orthologous Gene IDs
prunus_persica Prupe.8G171200_v2.0.a1 Prupe.8G171500_v2.0.a1
pyrus_communis pycom01g15660
rosa_roxburghii Rroxscaffold_1G00012460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 197
AcsI RAATTY 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 8, 220
AluI AGCT 2 cut(s) 8, 220
AoxI GGCC 2 cut(s) 135, 152
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 199, 240
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BauI CACGAG 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 151
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 67, 235
Bpu10I CCTNAGC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 138, 149, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 138, 149, 200
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 137, 154
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 2 cut(s) 137, 154
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 40
BspANI GGCC 2 cut(s) 137, 154
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 138, 149, 200
BssMI GATC 1 cut(s) 40
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 2 cut(s) 199, 240
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 194, 237
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 137, 154
BtsCI GGATG 1 cut(s) 82
CfoI GCGC 2 cut(s) 199, 240
CseI GACGC 2 cut(s) 203, 212
CviJI RGCY 7 cut(s) 8, 98, 115, 137, 143, 154, 220
CviKI_1 RGCY 7 cut(s) 8, 98, 115, 137, 143, 154, 220
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 138
FaiI YATR 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 221
GlaI GCGC 2 cut(s) 198, 239
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 137, 154
HgaI GACGC 2 cut(s) 203, 212
HhaI GCGC 2 cut(s) 199, 240
Hin6I GCGC 2 cut(s) 197, 238
HinP1I GCGC 2 cut(s) 197, 238
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 71, 121
HpyAV CCTTC 3 cut(s) 83, 102, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 237
HpyF3I CTNAG 1 cut(s) 9
HspAI GCGC 2 cut(s) 197, 238
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 5, 112
LpnPI CCDG 4 cut(s) 134, 136, 163, 198
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 2 cut(s) 67, 235
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 27, 31, 34, 70
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 125
MnlI CCTC 7 cut(s) 4, 42, 67, 75, 153, 210, 222
MslI CAYNNNNRTG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 194, 237
NdeII GATC 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 75
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 10, 214, 222
SfaNI GCATC 2 cut(s) 67, 235
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 138
TasI AATT 1 cut(s) 125
TseI GCWGC 1 cut(s) 220
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.