Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0019792

Physical Location & Seq

Genomic Coordinates Forward (+)

6241339 .. 6243032

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCGAGTTATGGGGATGCGAGCCAGAAGGTAGACTATGTGTTCAAGGTGGTACTGATAGGAGACTCTGCGGTGGGCAAGTCTCAGATTCTGGCCAGGTTTGCCCGAAACGAGTTTAGCTTGGACTCCAAAGCCACCATCGGTGTCGAGTTTCAGACTCGGACCCTCCTCATCGAGCACAAGAGTGTCAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCGGTGACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGCTGGTCTATGATATAACCAAACGCCAGACCTTTGACCACATACCACGTTGGCTGGAGGAGCTGCGCAGTCATGCGGACAAGAACATAGTCATCATTCTGATAGGCAACAAAAGTTCGATCTCGAGAACCAGCGTGCAGTCCCCACTGAAGATGCCAAAGAATTTGCTGAAAAGGACGGACTTTTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

9.8

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 138	1.6e-12	ADP-ribosylation factor family
Ras	PF00071	16 - 133	2.5e-46	Ras family
Roc	PF08477	16 - 129	3.3e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	16 - 124	9.2e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019792)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom01g06130
rosa_chinensis	RchiOBHm_Chr3g0480611
rosa_samantha	Rh1CG011900 Rh3BG269200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	71, 233, 347
AcoI	YGGCCR	2 cut(s)	93, 214
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	95
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	120, 334
AluI	AGCT	2 cut(s)	120, 334
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	57, 87
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	2 cut(s)	93, 214
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	162
BalI	TGGCCA	2 cut(s)	95, 216
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	57, 87
BfmI	CTRYAG	1 cut(s)	250
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	7, 414
BpmI	CTGGAG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	98, 209
BseRI	GAGGAG	2 cut(s)	158, 344
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	95, 216
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	218, 397
BsmAI	GTCTC	2 cut(s)	57, 87
BsmFI	GGGAC	2 cut(s)	218, 397
BsnI	GGCC	2 cut(s)	95, 216
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	198, 390
BspACI	CCGC	3 cut(s)	71, 233, 347
BspANI	GGCC	2 cut(s)	95, 216
BspCNI	CTCAG	2 cut(s)	97, 208
BspLI	GGNNCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	276
BssMI	GATC	2 cut(s)	198, 390
Bst2UI	CCWGG	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	22, 214, 407
BstDEI	CTNAG	3 cut(s)	84, 195, 462
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	201, 393
BstMAI	GTCTC	2 cut(s)	57, 87
BstMBI	GATC	2 cut(s)	198, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	95, 216
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 416
Cac8I	GCNNGC	3 cut(s)	22, 214, 407
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	8 cut(s)	24, 95, 120, 134, 194, 216, 325, 334
CviKI_1	RGCY	8 cut(s)	24, 95, 120, 134, 194, 216, 325, 334
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	84, 195, 462
DpnI	GATC	2 cut(s)	200, 392
DpnII	GATC	2 cut(s)	198, 390
EaeI	YGGCCR	2 cut(s)	93, 214
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	95
FaeI	CATG	1 cut(s)	347
FaiI	YATR	9 cut(s)	12, 39, 228, 247, 282, 287, 314, 345, 359
FaqI	GGGAC	2 cut(s)	218, 397
FatI	CATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	95, 216
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	65, 88, 125, 157
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	87, 156, 162, 198, 372
Hpy188III	TCNNGA	2 cut(s)	394, 396
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	245, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
HpyF3I	CTNAG	3 cut(s)	84, 195, 462
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	198, 390
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	2 cut(s)	7, 414
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	200, 392
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	198, 390
MboII	GAAGA	2 cut(s)	433, 450
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	2 cut(s)	95, 216
MluCI	AATT	1 cut(s)	433
MluNI	TGGCCA	2 cut(s)	95, 216
MlyI	GAGTC	3 cut(s)	59, 119, 151
MnlI	CCTC	3 cut(s)	176, 179, 322
Mox20I	TGGCCA	2 cut(s)	95, 216
MscI	TGGCCA	2 cut(s)	95, 216
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	2 cut(s)	95, 216
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
NdeII	GATC	2 cut(s)	198, 390
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	3 cut(s)	59, 119, 151
PpsI	GAGTC	3 cut(s)	59, 119, 151
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	183
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	198, 390
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	3 cut(s)	59, 119, 151
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	7 cut(s)	33, 51, 101, 122, 305, 322, 336
SfaNI	GCATC	2 cut(s)	7, 414
SfcI	CTRYAG	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	3 cut(s)	71, 233, 347
StyD4I	CCNGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	4 cut(s)	147, 174, 389, 395
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	214, 423
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	214, 423
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.