Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019792

Physical Location & Seq

Genomic Coordinates Reverse (-)

26239539 .. 26242020

Gene Structure 2482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCGAATATGTATGGTGATTATAACCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGAGACTCGGCGGTTGGGAAAACACAGCTCCTCGCACGATTTGCAAGAAATGAATTCAGTTTAGACTCCAAAGCCACAATCGGAGTTGAATTTCAGACGAAAACACTTGTTCTTGATAACAAAACCGTTAAGGCGCAGATTTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGGAGATATATCGAATAATGAGCAAGAAGACCCTCGCTGCTAATGAGGCAGATGGTGGGGATTCAGGGCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCCAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

143

Amino Acids

15.39

Weight (kDa)

8.85

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 88	8.2e-08	ADP-ribosylation factor family
Ras	PF00071	17 - 106	1.8e-31	Ras family
Roc	PF08477	17 - 95	3.2e-25	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019792)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom01g06130
rosa_chinensis	RchiOBHm_Chr3g0480611
rosa_samantha	Rh1CG011900 Rh3BG269200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	116, 152
AfaI	GTAC	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	49, 152
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	317, 411, 414
ApoI	RAATTY	2 cut(s)	116, 152
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	304, 398, 401
BccI	CCATC	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	318, 412, 415
BlsI	GCNGC	3 cut(s)	319, 413, 416
BmiI	GGNNCC	2 cut(s)	350, 397
BpiI	GAAGAC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	304, 398, 401
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	351, 400
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	350, 397
BspT107I	GGYRCC	1 cut(s)	395
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	190, 373
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 269, 326
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	304, 398, 401
BstV2I	GAAGAC	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviJI	RGCY	6 cut(s)	91, 137, 219, 349, 392, 411
CviKI_1	RGCY	6 cut(s)	91, 137, 219, 349, 392, 411
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	351
FaiI	YATR	6 cut(s)	11, 15, 24, 42, 250, 289
FaqI	GGGAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	318, 412, 415
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	318, 412, 415
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	318, 412, 415
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	68, 128, 341
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	65, 146, 159, 269
Hpy188III	TCNNGA	3 cut(s)	176, 241, 383
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	2 cut(s)	190, 373
HpyCH4V	TGCA	4 cut(s)	107, 248, 263, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 269, 326
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	96, 269, 354
LpnPI	CCDG	7 cut(s)	41, 201, 330, 378, 396, 402, 413
Lsp1109I	GCAGC	3 cut(s)	304, 398, 401
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	43, 319, 417
MhlI	GDGCHC	2 cut(s)	351, 400
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	3 cut(s)	116, 152, 366
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	62, 122
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	104, 251, 319, 323
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	192, 354
Msp20I	TGGCCA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	104, 269, 326
NdeII	GATC	1 cut(s)	60
NlaIV	GGNNCC	2 cut(s)	350, 397
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	319, 413, 416
PleI	GAGTC	2 cut(s)	62, 122
PpsI	GAGTC	2 cut(s)	62, 122
PsiI	TTATAA	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	350, 397
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	192, 354
SatI	GCNGC	3 cut(s)	318, 412, 415
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	2 cut(s)	62, 122
SduI	GDGCHC	2 cut(s)	351, 400
SetI	ASST	3 cut(s)	93, 230, 262
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	116, 152, 366
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	190, 373
TaqI	TCGA	2 cut(s)	5, 292
TasI	AATT	3 cut(s)	116, 152, 366
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	192, 354
Tru9I	TTAA	2 cut(s)	192, 354
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	317, 411, 414
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	353
XapI	RAATTY	2 cut(s)	116, 152
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.