Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0019792

Physical Location & Seq

Genomic Coordinates Reverse (-)

1831514 .. 1833577

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGAATTTGCAGAGTAGTTTCAATCAGAAGATCGACTACGTGTTCAAGGTGGTGTTGATCGGAGACTCGGCGGTGGGTAAGTCTCAGCTCTTGGCGCGCTTTGCTCGGAATGAGTTCAGTTTGGAGTCGAAAGCAACCATTGGGGTTGAGTTTCAGACCAAGACGCTTCTGATCGACCACAAAACCATCAAGGCCCAGATTTGGGATACTGCTGGCCAAGAAAGATACAGGGCCGTGACAAGTGCATACTATAGGGGTTCAGTGGGGGCAATGCTGGTCTATGACATTACGAAGCCTCAGTCATTTGATCATGGGACATTTGTAATACAGCTCAGGCTAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

9.43

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 103	9.4e-09	ADP-ribosylation factor family
Ras	PF00071	17 - 105	1.5e-36	Ras family
Roc	PF08477	17 - 101	4.9e-27	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019792)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom01g06130
rosa_chinensis	RchiOBHm_Chr3g0480611
rosa_samantha	Rh1CG011900 Rh3BG269200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	100
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	204, 205
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	25, 49
AluBI	AGCT	2 cut(s)	91, 334
AluI	AGCT	2 cut(s)	91, 334
Alw26I	GTCTC	2 cut(s)	60, 90
AoxI	GGCC	3 cut(s)	195, 217, 234
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	100, 102
AspS9I	GGNCC	2 cut(s)	196, 234
BalI	TGGCCA	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	60, 90
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	196, 234
Bpu10I	CCTNAGC	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 205
Bse3DI	GCAATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	204, 205
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	101, 314, 349
BsePI	GCGCGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	197, 219, 236
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	204, 205
BsmAI	GTCTC	2 cut(s)	60, 90
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	197, 219, 236
Bsp143I	GATC	4 cut(s)	33, 60, 174, 310
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	197, 219, 236
BspCNI	CTCAG	3 cut(s)	100, 313, 348
BspFNI	CGCG	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	279
BssHII	GCGCGC	1 cut(s)	98
BssMI	GATC	4 cut(s)	33, 60, 174, 310
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	100, 217
BstDEI	CTNAG	3 cut(s)	87, 300, 335
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	100, 102
BstKTI	GATC	4 cut(s)	36, 63, 177, 313
BstMAI	GTCTC	2 cut(s)	60, 90
BstMBI	GATC	4 cut(s)	33, 60, 174, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 104
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	197, 219, 236
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	100, 217
CfoI	GCGC	2 cut(s)	100, 102
Cfr13I	GGNCC	2 cut(s)	196, 234
CseI	GACGC	1 cut(s)	175
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	91, 197, 219, 236, 298, 334, 340
CviKI_1	RGCY	7 cut(s)	91, 197, 219, 236, 298, 334, 340
DdeI	CTNAG	3 cut(s)	87, 300, 335
DpnI	GATC	4 cut(s)	35, 62, 176, 312
DpnII	GATC	4 cut(s)	33, 60, 174, 310
EaeI	YGGCCR	1 cut(s)	217
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	250, 255, 285, 315
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	310
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	2 cut(s)	99, 101
HaeIII	GGCC	3 cut(s)	197, 219, 236
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	100, 102
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	2 cut(s)	98, 100
HinP1I	GCGC	2 cut(s)	98, 100
HinfI	GANTC	2 cut(s)	68, 128
Hpy188I	TCNGA	5 cut(s)	30, 65, 111, 159, 174
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	13, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 104
HpyF3I	CTNAG	3 cut(s)	87, 300, 335
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	2 cut(s)	98, 100
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	33, 60, 174, 310
LpnPI	CCDG	5 cut(s)	201, 212, 217, 263, 322
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	35, 62, 176, 312
MboI	GATC	4 cut(s)	33, 60, 174, 310
MboII	GAAGA	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	62, 137
MnlI	CCTC	1 cut(s)	309
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	97, 104
NdeII	GATC	4 cut(s)	33, 60, 174, 310
NlaIII	CATG	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	116
PleI	GAGTC	2 cut(s)	62, 136
PpsI	GAGTC	2 cut(s)	62, 136
Ppu21I	YACGTR	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	196, 234
PteI	GCGCGC	1 cut(s)	98
Sau3AI	GATC	4 cut(s)	33, 60, 174, 310
Sau96I	GGNCC	2 cut(s)	196, 234
SchI	GAGTC	2 cut(s)	62, 137
SetI	ASST	4 cut(s)	45, 54, 93, 336
SfcI	CTRYAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	5, 36, 131, 177
TasI	AATT	1 cut(s)	7
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.