Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Reverse (-)

796166 .. 799366

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G009000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAATTTGCAAAGTAATTTCAATCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATCGGAGACTCAGCGGTGGGAAAGTCTCAGCTCTTGGCTCGTTTTGCTCGGAACGAGTTCAGTTTGGAGTCAAAAGCAACAATTGGGGTTGAGTTCCAGACTAAGACGCTCGTCATCGACCACAAAACCATCAAGGCCCAGATTTGGGACACCGCTGGTCAAGAAAGATACAGGGCGGTGACAAGTGCTTACTATAGAGGTTCAGTGGGGGCAATGCTGGTCTATGACATAACCAAGCATCAATCATTTGATCATGTAACCAAGTGGTTAGAGGAATTGAGGGGGCATGCTGACAGCAATATTGTCGTGATGCTTGTAGGTAACAAGTCTGACCTTGGAACACTGAGAGCTGTACCTTCTGAGGATGCGAAAGAGTTTGCCCAAAGGGAGAACCTATTCTTTATGGAGGCATCAGCACTTGAGGCTACTAATGTTGAATCTGCATTTATTACAGTCCTAACGGAAATTTATCGAATCCTTGGCAAGAAGTCCCTCATTGCCAATGACGAAGCAGAGTCGGAAGGGAGTGCCTCACTTCTCAAGGGTACAAAAATTGTTGTCCCTGGAAGAGAGCCCGAGCCCCAAGGAAATAGTTGTTGCTGGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

224

Amino Acids

24.72

Weight (kDa)

5.87

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	74, 213, 236
AcsI	RAATTY	2 cut(s)	7, 525
AfaI	GTAC	2 cut(s)	414, 607
AfiI	CCNNNNNNNGG	2 cut(s)	204, 205
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	25, 49, 497
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	2 cut(s)	91, 410
AluI	AGCT	2 cut(s)	91, 410
Alw26I	GTCTC	2 cut(s)	60, 90
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	7, 525
Asp700I	GAANNNNTTC	2 cut(s)	116, 455
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	635
BanII	GRGCYC	2 cut(s)	636, 642
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	1 cut(s)	657
BccI	CCATC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	60, 90
BfmI	CTRYAG	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	624
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	4 cut(s)	307, 360, 415, 479
BoxI	GACNNNNGTC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	500, 584
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	394, 538, 622, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 205
Bse3DI	GCAATG	2 cut(s)	279, 555
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	394, 538, 622, 643
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	204, 205
BseMI	GCAATG	2 cut(s)	279, 555
BseMII	CTCAG	4 cut(s)	84, 101, 395, 411
BshFI	GGCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	635
BslFI	GGGAC	3 cut(s)	221, 535, 605
BslI	CCNNNNNNNGG	2 cut(s)	204, 205
BsmAI	GTCTC	2 cut(s)	60, 90
BsmFI	GGGAC	3 cut(s)	221, 535, 605
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	2 cut(s)	636, 642
Bsp143I	GATC	3 cut(s)	33, 60, 310
BspACI	CCGC	3 cut(s)	74, 213, 236
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	4 cut(s)	83, 100, 396, 412
BsrDI	GCAATG	2 cut(s)	279, 555
BssECI	CCNNGG	4 cut(s)	394, 538, 622, 643
BssMI	GATC	3 cut(s)	33, 60, 310
BssT1I	CCWWGG	3 cut(s)	394, 538, 643
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	70, 87, 162, 404, 420
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	3 cut(s)	36, 63, 313
BstMAI	GTCTC	2 cut(s)	60, 90
BstMBI	GATC	3 cut(s)	33, 60, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	270, 401
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	413, 606
CviAII	CATG	2 cut(s)	314, 347
CviJI	RGCY	7 cut(s)	91, 98, 197, 410, 485, 634, 640
CviKI_1	RGCY	7 cut(s)	91, 98, 197, 410, 485, 634, 640
CviQI	GTAC	2 cut(s)	413, 606
DdeI	CTNAG	5 cut(s)	70, 87, 162, 404, 420
DpnI	GATC	3 cut(s)	35, 62, 312
DpnII	GATC	3 cut(s)	33, 60, 310
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
Eco130I	CCWWGG	3 cut(s)	394, 538, 643
Eco24I	GRGCYC	2 cut(s)	636, 642
Eco88I	CYCGRG	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	3 cut(s)	394, 538, 643
EcoT38I	GRGCYC	2 cut(s)	636, 642
ErhI	CCWWGG	3 cut(s)	394, 538, 643
FaeI	CATG	2 cut(s)	317, 350
FaiI	YATR	7 cut(s)	255, 285, 290, 315, 348, 464, 670
FaqI	GGGAC	3 cut(s)	221, 535, 605
FatI	CATG	2 cut(s)	313, 346
FbaI	TGATCA	1 cut(s)	310
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	2 cut(s)	636, 642
HaeIII	GGCC	1 cut(s)	197
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	317, 350
HinfI	GANTC	5 cut(s)	68, 128, 497, 534, 575
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	6 cut(s)	30, 65, 111, 391, 421, 580
Hpy188III	TCNNGA	3 cut(s)	157, 221, 367
HpyAV	CCTTC	2 cut(s)	426, 575
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	13, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	5 cut(s)	70, 87, 162, 404, 420
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	317, 350
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	33, 60, 310
LpnPI	CCDG	8 cut(s)	170, 201, 212, 217, 263, 609, 636, 646
LweI	GCATC	4 cut(s)	307, 360, 415, 479
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	238, 316, 380
MalI	GATC	3 cut(s)	35, 62, 312
MboI	GATC	3 cut(s)	33, 60, 310
MboII	GAAGA	3 cut(s)	43, 639, 657
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	636, 642
MluCI	AATT	6 cut(s)	7, 19, 141, 335, 525, 612
MlyI	GAGTC	3 cut(s)	62, 137, 584
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	8 cut(s)	251, 325, 333, 415, 460, 475, 563, 601
MroXI	GAANNNNTTC	2 cut(s)	116, 455
MspA1I	CMGCKG	2 cut(s)	74, 215
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NdeII	GATC	3 cut(s)	33, 60, 310
NlaIII	CATG	2 cut(s)	317, 350
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PdmI	GAANNNNTTC	2 cut(s)	116, 455
PfeI	GAWTC	2 cut(s)	497, 534
PleI	GAGTC	3 cut(s)	62, 136, 583
PpsI	GAGTC	3 cut(s)	62, 136, 583
Ppu21I	YACGTR	1 cut(s)	43
PshAI	GACNNNNGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	414, 607
RsaNI	GTAC	2 cut(s)	413, 606
Sau3AI	GATC	3 cut(s)	33, 60, 310
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	62, 137, 584
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	636, 642
SetI	ASST	9 cut(s)	45, 54, 93, 262, 382, 396, 412, 418, 456
SfaNI	GCATC	4 cut(s)	307, 360, 415, 479
SfcI	CTRYAG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	479, 599
SmoI	CTYRAG	2 cut(s)	479, 599
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	6 cut(s)	7, 19, 141, 335, 525, 612
SsiI	CCGC	3 cut(s)	74, 213, 236
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	3 cut(s)	394, 538, 643
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	5, 36, 177, 532
TasI	AATT	6 cut(s)	7, 19, 141, 335, 525, 612
TfiI	GAWTC	2 cut(s)	497, 534
TscAI	CASTG	2 cut(s)	270, 408
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	270, 408
XapI	RAATTY	2 cut(s)	7, 525
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	116, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.