Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Forward (+)

37040035 .. 37043074

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1315800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGAATTTGGCGAGTAATTTCAATCAGAAGATCGACTACGTGTTCAAGGTGGTGCTGATTGGAGACTCGGCGGTGGGTAAGTCTCAGCTCTTGGCTCGCTTTGCTCGGAATGAGTTCAGCTTGGAGTCCAAGGCAACCATTGGGGTTGAGTTCCAGACTAAGACCCTCGTGATCGACCACAAAACCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGATACAGGGCGGTGACAAGTGCGTACTATAGAGGTTCGGTGGGCGCAATGCTGGTCTATGACATAACCAAGCCTCAATCATTTGATCATGTAACCAAGTGGTTAGAGGAATTGAGGGGGCATGCCGACAACAATATTGTTGTGATGCTTGTAGGTAACAAGTCCGACCTGGGGACACTGCGAGCTGTACCTTCTGAGGATGCAAAAGAGTTTGCCCAAAGGGAGAACCTCTTCTTTATGGAGGCATCAGCACTTGAGGCTACTAATGTTGAATCTGCATTCGTTACAGTCCTAACAGAAATTTATCGAATTGTTGGCAAGAAGTCCCTCATTCCCAATGAGGAAGCAGAGTCCGGGAGTTCCTCACTTCTCAAGGGAACAAAACTTGTCGTTCCTCGACAAGAGCCCGAGCCTCAAGCGAGTAGCTGTTGCTGGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.6

Weight (kDa)

5.99

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 151	6e-13	ADP-ribosylation factor family
Ras	PF00071	17 - 177	2e-62	Ras family
Roc	PF08477	17 - 131	1.6e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	17 - 126	8e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 236
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	7, 525
AfaI	GTAC	2 cut(s)	251, 414
AfiI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	25, 49, 497
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	91, 123, 410, 651
AluI	AGCT	4 cut(s)	91, 123, 410, 651
Alw26I	GTCTC	2 cut(s)	60, 90
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	195, 217
ApoI	RAATTY	2 cut(s)	7, 525
Asp700I	GAANNNNTTC	2 cut(s)	116, 455
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	654
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	60, 90
BfmI	CTRYAG	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	395, 580
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	395, 580
BmsI	GCATC	3 cut(s)	360, 415, 479
BpiI	GAAGAC	1 cut(s)	654
BpuEI	CTTGAG	3 cut(s)	500, 581, 624
BpuMI	CCSGG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	132, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 205, 396
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	132, 394
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	101, 411
BshFI	GGCC	2 cut(s)	197, 219
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	216, 579
BslFI	GGGAC	3 cut(s)	221, 412, 535
BslI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
BsmAI	GTCTC	2 cut(s)	60, 90
BsmFI	GGGAC	3 cut(s)	221, 412, 535
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	197, 219
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	33, 174, 310
BspACI	CCGC	2 cut(s)	74, 236
BspANI	GGCC	2 cut(s)	197, 219
BspCNI	CTCAG	2 cut(s)	100, 412
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	132, 394
BssMI	GATC	3 cut(s)	33, 174, 310
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	100, 217, 348, 408
BstDEI	CTNAG	3 cut(s)	87, 162, 420
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	36, 177, 313
BstMAI	GTCTC	2 cut(s)	60, 90
BstMBI	GATC	3 cut(s)	33, 174, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	393, 578
BstSFI	CTRYAG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	197, 219
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	210, 401
BtsIMutI	CAGTG	2 cut(s)	210, 401
Cac8I	GCNNGC	4 cut(s)	100, 217, 348, 408
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	250, 413
CviAII	CATG	2 cut(s)	314, 347
CviQI	GTAC	2 cut(s)	250, 413
DdeI	CTNAG	3 cut(s)	87, 162, 420
DpnI	GATC	3 cut(s)	35, 176, 312
DpnII	GATC	3 cut(s)	33, 174, 310
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	317, 350
FaiI	YATR	7 cut(s)	255, 285, 290, 315, 348, 464, 667
FaqI	GGGAC	3 cut(s)	221, 412, 535
FatI	CATG	2 cut(s)	313, 346
FbaI	TGATCA	1 cut(s)	310
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	633
GlaI	GCGC	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	197, 219
HapII	CCGG	2 cut(s)	216, 579
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	317, 350
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	4 cut(s)	68, 128, 497, 575
HpaII	CCGG	2 cut(s)	216, 579
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	30, 111, 391, 421
Hpy188III	TCNNGA	2 cut(s)	157, 172
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	428, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	3 cut(s)	87, 162, 420
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	317, 350
HspAI	GCGC	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	33, 174, 310
LpnPI	CCDG	9 cut(s)	170, 212, 217, 229, 263, 380, 407, 592, 643
LweI	GCATC	3 cut(s)	360, 415, 479
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	238, 316, 380, 508
MalI	GATC	3 cut(s)	35, 176, 312
MboI	GATC	3 cut(s)	33, 174, 310
MboII	GAAGA	3 cut(s)	43, 448, 654
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	5 cut(s)	7, 19, 335, 525, 534
MlyI	GAGTC	3 cut(s)	62, 137, 584
MmeI	TCCRAC	1 cut(s)	414
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	2 cut(s)	116, 455
MspI	CCGG	2 cut(s)	216, 579
MspR9I	CCNGG	2 cut(s)	395, 580
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NaeI	GCCGGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	33, 174, 310
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	317, 350
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	503
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	116, 455
PfeI	GAWTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	578
PleI	GAGTC	3 cut(s)	62, 136, 583
PpsI	GAGTC	3 cut(s)	62, 136, 583
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	251, 414
RsaNI	GTAC	2 cut(s)	250, 413
Sau3AI	GATC	3 cut(s)	33, 174, 310
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	62, 137, 584
ScrFI	CCNGG	2 cut(s)	395, 580
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	3 cut(s)	360, 415, 479
SfcI	CTRYAG	1 cut(s)	253
SmlI	CTYRAG	3 cut(s)	479, 596, 639
SmoI	CTYRAG	3 cut(s)	479, 596, 639
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	5 cut(s)	7, 19, 335, 525, 534
SsiI	CCGC	2 cut(s)	74, 236
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	393, 578
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	5 cut(s)	5, 36, 177, 532, 622
TasI	AATT	5 cut(s)	7, 19, 335, 525, 534
TfiI	GAWTC	1 cut(s)	497
TscAI	CASTG	2 cut(s)	217, 408
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	217, 408
XapI	RAATTY	2 cut(s)	7, 525
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	116, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.