Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Reverse (-)

1180515 .. 1183205

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAATGTTCGTCGTCCCATATTGATATTGGTAGATCGGTCTTCAGTCGTGCCCTGTTTTTGTATGAGAATTGGGAGAAAGCCATGTCGAATTTGCAAAGTAGTTTCAATCAGAAGATCGACTACGTATTCAAGGTGGTGTTGATCGGAGACTCGGCGGTGGGCAAGTCTCAGCTCTTGGCTCGGTTTGCTCGTAACGAGTTCAGTTTGGAGTCCAAAGCCACCATCGGGGTTGAGTTTCAGACCAAGACGCTTTCGATCGACCAGAAAACCATCAAGGCCCAGATTTGGGATACTGCTGGCCAAGAAAGATACAGGGCAGTGACAAGTGCATACTACAGGGGTTCAGTGGGTGCAATGCTGGTCTACGACATTACCAAGCCTCAGTCATTTGATCATGTAACAAGGTGGTTAGAGGAATTGAGGGGGCATGCTGACAGCAATATTGTTGTCATGCTGGTTGGTAACAAATCTGACCTGGGGACGCTGCGAGCTGTACCGGCTGAGGATGCAAAAGATTTTGCCCAGAGAGAGAACCTCTTCTTTATGGAGGCATCAGCTCTCGAATCGACCAATGTTGAATCTGCGTTCATTACAGTCCTAACAGAAATTTATCGAATAGTTGGCAAGAAGGCCCTCATTGCTAATGATGAAACAGAGTCTGGAGGGAATTCCTCACTTCTCAAGGGAACTCAAATTATTGTCCCTGGACAGGATCCCTTGCCTGAAGCAAAATCTGGCTGTTGCTTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

253

Amino Acids

27.9

Weight (kDa)

5.99

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	41 - 162	1.9e-12	ADP-ribosylation factor family
Ras	PF00071	45 - 205	5.2e-62	Ras family
Roc	PF08477	45 - 159	2.3e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	2 cut(s)	710, 723
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	3 cut(s)	91, 609, 670
AcuI	CTGAAG	2 cut(s)	28, 747
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	4 cut(s)	228, 288, 289, 712
AgsI	TTSAA	3 cut(s)	109, 133, 581
AjnI	CCWGG	2 cut(s)	477, 706
AluBI	AGCT	3 cut(s)	175, 494, 560
AluI	AGCT	3 cut(s)	175, 494, 560
Alw26I	GTCTC	2 cut(s)	144, 174
AlwI	GGATC	2 cut(s)	710, 723
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	279, 301, 633
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	3 cut(s)	91, 609, 670
Asp700I	GAANNNNTTC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	280, 634
BaeGI	GKGCMC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	715
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	2 cut(s)	233, 281
BciT130I	CCWGG	2 cut(s)	479, 708
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	144, 174
BfmI	CTRYAG	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	479, 708
BmgT120I	GGNCC	2 cut(s)	280, 634
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	2 cut(s)	479, 708
BmsI	GCATC	2 cut(s)	499, 563
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	478, 706
Bsc4I	CCNNNNNNNGG	4 cut(s)	228, 288, 289, 712
Bse118I	RCCGGY	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	363, 639
BseBI	CCWGG	2 cut(s)	479, 708
BseDI	CCNNGG	2 cut(s)	478, 706
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	4 cut(s)	228, 288, 289, 712
BseMI	GCAATG	2 cut(s)	363, 639
BseMII	CTCAG	3 cut(s)	185, 398, 495
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	281, 303, 635
BsiEI	CGRYCG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	2 cut(s)	496, 689
BslI	CCNNNNNNNGG	4 cut(s)	228, 288, 289, 712
BsmAI	GTCTC	2 cut(s)	144, 174
BsmFI	GGGAC	2 cut(s)	496, 689
BsnI	GGCC	3 cut(s)	281, 303, 635
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	3 cut(s)	281, 303, 635
BspCNI	CTCAG	3 cut(s)	184, 397, 496
BspLI	GGNNCC	1 cut(s)	717
BspPI	GGATC	2 cut(s)	710, 723
BsrDI	GCAATG	2 cut(s)	363, 639
BsrFI	RCCGGY	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	478, 706
BssMI	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
Bst2UI	CCWGG	2 cut(s)	479, 708
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	301, 432, 492
BstDEI	CTNAG	3 cut(s)	171, 384, 504
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	6 cut(s)	38, 120, 147, 261, 397, 718
BstMAI	GTCTC	2 cut(s)	144, 174
BstMBI	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 500, 509, 641
BstNI	CCWGG	2 cut(s)	479, 708
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	477, 706
BstSFI	CTRYAG	1 cut(s)	337
BstSLI	GKGCMC	1 cut(s)	55
BstSNI	TACGTA	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	281, 303, 635
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 354
Cac8I	GCNNGC	3 cut(s)	301, 432, 492
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	280, 634
CseI	GACGC	2 cut(s)	259, 493
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	4 cut(s)	85, 398, 431, 454
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	171, 384, 504
DpnI	GATC	6 cut(s)	37, 119, 146, 260, 396, 717
DpnII	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco105I	TACGTA	1 cut(s)	127
Eco57I	CTGAAG	2 cut(s)	28, 747
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	2 cut(s)	477, 706
FaeI	CATG	4 cut(s)	88, 401, 434, 457
FaiI	YATR	8 cut(s)	21, 66, 86, 334, 399, 432, 455, 548
FaqI	GGGAC	2 cut(s)	496, 689
FatI	CATG	4 cut(s)	84, 397, 430, 453
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	1 cut(s)	488
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	281, 303, 635
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	2 cut(s)	259, 493
Hin1II	CATG	4 cut(s)	88, 401, 434, 457
HinfI	GANTC	5 cut(s)	152, 212, 566, 581, 659
HpaII	CCGG	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	114, 149, 243, 475
Hpy188III	TCNNGA	2 cut(s)	563, 663
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	625
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	97, 332, 356, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 500, 509, 641
HpyF3I	CTNAG	3 cut(s)	171, 384, 504
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	88, 401, 434, 457
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	2 cut(s)	499, 563
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	4 cut(s)	194, 322, 400, 464
MalI	GATC	6 cut(s)	37, 119, 146, 260, 396, 717
MboI	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
MboII	GAAGA	3 cut(s)	34, 127, 532
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	6 cut(s)	70, 91, 419, 609, 670, 696
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	3 cut(s)	146, 221, 668
MnlI	CCTC	9 cut(s)	393, 409, 417, 499, 544, 548, 647, 659, 685
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	479, 708
MvaI	CCWGG	2 cut(s)	479, 708
MwoI	GCNNNNNNNGC	4 cut(s)	188, 500, 509, 641
NdeII	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
NlaIII	CATG	4 cut(s)	88, 401, 434, 457
NlaIV	GGNNCC	1 cut(s)	717
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	566, 581
PkrI	GCNGC	1 cut(s)	489
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	3 cut(s)	146, 220, 667
PpsI	GAGTC	3 cut(s)	146, 220, 667
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	477, 706
PspGI	CCWGG	2 cut(s)	477, 706
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	2 cut(s)	280, 634
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	715
PvuI	CGATCG	1 cut(s)	261
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	6 cut(s)	35, 117, 144, 258, 394, 715
Sau96I	GGNCC	2 cut(s)	280, 634
SchI	GAGTC	3 cut(s)	146, 221, 668
ScrFI	CCNGG	2 cut(s)	479, 708
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	8 cut(s)	129, 138, 177, 410, 480, 496, 540, 562
SfaNI	GCATC	2 cut(s)	499, 563
SfcI	CTRYAG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SnaBI	TACGTA	1 cut(s)	127
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	6 cut(s)	70, 91, 419, 609, 670, 696
SsiI	CCGC	1 cut(s)	158
SspI	AATATT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	477, 706
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	7 cut(s)	89, 120, 257, 261, 564, 569, 616
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	6 cut(s)	70, 91, 419, 609, 670, 696
TfiI	GAWTC	2 cut(s)	566, 581
TscAI	CASTG	2 cut(s)	327, 354
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	17, 580, 666
TspRI	CASTG	2 cut(s)	327, 354
XapI	RAATTY	3 cut(s)	91, 609, 670
XceI	RCATGY	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.