Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Forward (+)

24236015 .. 24238063

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGAATTTGGCGAGTAATTTCAATCAGAAGATCGACTACGTGTTTAAGGTGGTGCTGATCGGAGACTCGGCGGTGGGTAAGTCTCAGCTCTTGGCTCGCTTTGCTCGGAACGAGTTCAGCTTGGAGTCCAAGTCAACCATTGGGGTTGAGTTCCAGACTAAGACCCTCGTGATCGACCACAAAACCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGATACAGGGCGGTGACAAGTGCATACTATAGAGGTTCGGTGGGGGCAATGCTGGTCTATGACATAACCAAGCCTCAATCATTTGATCATGTAACCAAGTGGTTAGAGGAATTGAGGGGGCATGCCGACAACAATATTGTTGTGATGCTTGTAGGTAACAAGTCCGACCTGGGGACACTGCGAGCTGTACCTTCTGAGGATGCTAAAGAGTTTGCCCAAAGGGAGAACCTCTTCTTTATGGAGGCATCAGCACTTGAGGCTACTAATGTTGAATCTGCATTCGTTACAGTCCTAACAGAAATTTATAGAATTGTTGGCAAGAAGTCCCTCATTCCCAATGAGGAAGCAGAGTCTGGGAGTTCCTCACTTCTCAAGGGAACAAAACTTGTCGTTCCTGGACAAGAGCCCGAGTCTCAAGCAAGTAGCTGTTGCTGGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.51

Weight (kDa)

5.72

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 236
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	7, 525
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	25, 497
AjnI	CCWGG	2 cut(s)	393, 619
AluBI	AGCT	4 cut(s)	91, 123, 410, 651
AluI	AGCT	4 cut(s)	91, 123, 410, 651
Alw26I	GTCTC	3 cut(s)	60, 90, 642
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	195, 217
ApoI	RAATTY	2 cut(s)	7, 525
Asp700I	GAANNNNTTC	2 cut(s)	116, 455
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	654
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	395, 621
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	60, 90, 642
BfmI	CTRYAG	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	395, 621
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	395, 621
BmsI	GCATC	3 cut(s)	360, 415, 479
BpiI	GAAGAC	1 cut(s)	654
BpuEI	CTTGAG	3 cut(s)	500, 581, 624
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 205, 396
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	395, 621
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	101, 411
BshFI	GGCC	2 cut(s)	197, 219
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	3 cut(s)	221, 412, 535
BslI	CCNNNNNNNGG	3 cut(s)	204, 205, 396
BsmAI	GTCTC	3 cut(s)	60, 90, 642
BsmFI	GGGAC	3 cut(s)	221, 412, 535
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	197, 219
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	33, 60, 174, 310
BspACI	CCGC	2 cut(s)	74, 236
BspANI	GGCC	2 cut(s)	197, 219
BspCNI	CTCAG	2 cut(s)	100, 412
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	4 cut(s)	33, 60, 174, 310
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	395, 621
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	100, 217, 348, 408
BstDEI	CTNAG	3 cut(s)	87, 162, 420
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	4 cut(s)	36, 63, 177, 313
BstMAI	GTCTC	3 cut(s)	60, 90, 642
BstMBI	GATC	4 cut(s)	33, 60, 174, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	2 cut(s)	395, 621
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	393, 619
BstSFI	CTRYAG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	197, 219
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	210, 401
BtsIMutI	CAGTG	2 cut(s)	210, 401
Cac8I	GCNNGC	4 cut(s)	100, 217, 348, 408
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	314, 347
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	3 cut(s)	87, 162, 420
DpnI	GATC	4 cut(s)	35, 62, 176, 312
DpnII	GATC	4 cut(s)	33, 60, 174, 310
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	393, 619
EcoT38I	GRGCYC	1 cut(s)	633
FaeI	CATG	2 cut(s)	317, 350
FaiI	YATR	9 cut(s)	250, 255, 285, 290, 315, 348, 464, 531, 667
FaqI	GGGAC	3 cut(s)	221, 412, 535
FatI	CATG	2 cut(s)	313, 346
FbaI	TGATCA	1 cut(s)	310
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	197, 219
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	317, 350
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	5 cut(s)	68, 128, 497, 575, 635
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	5 cut(s)	30, 65, 111, 391, 421
Hpy188III	TCNNGA	2 cut(s)	157, 172
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	248, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	3 cut(s)	87, 162, 420
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	317, 350
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	33, 60, 174, 310
LweI	GCATC	3 cut(s)	360, 415, 479
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	238, 316, 380, 508
MalI	GATC	4 cut(s)	35, 62, 176, 312
MboI	GATC	4 cut(s)	33, 60, 174, 310
MboII	GAAGA	3 cut(s)	43, 448, 654
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	5 cut(s)	7, 19, 335, 525, 534
MlyI	GAGTC	4 cut(s)	62, 137, 584, 644
MmeI	TCCRAC	1 cut(s)	414
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	2 cut(s)	116, 455
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	395, 621
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	395, 621
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	4 cut(s)	33, 60, 174, 310
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	317, 350
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	503
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	116, 455
PfeI	GAWTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	619
PleI	GAGTC	4 cut(s)	62, 136, 583, 643
PpsI	GAGTC	4 cut(s)	62, 136, 583, 643
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	393, 619
PspGI	CCWGG	2 cut(s)	393, 619
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	33, 60, 174, 310
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	4 cut(s)	62, 137, 584, 644
ScrFI	CCNGG	2 cut(s)	395, 621
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	3 cut(s)	360, 415, 479
SfcI	CTRYAG	1 cut(s)	253
SmlI	CTYRAG	3 cut(s)	479, 596, 639
SmoI	CTYRAG	3 cut(s)	479, 596, 639
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	5 cut(s)	7, 19, 335, 525, 534
SsiI	CCGC	2 cut(s)	74, 236
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	393, 619
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	5, 36, 177
TasI	AATT	5 cut(s)	7, 19, 335, 525, 534
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	217, 408
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	217, 408
XapI	RAATTY	2 cut(s)	7, 525
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	116, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.